DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment upSET and SET3

DIOPT Version :9

Sequence 1:NP_001261819.1 Gene:upSET / 39551 FlyBaseID:FBgn0036398 Length:3146 Species:Drosophila melanogaster
Sequence 2:NP_012954.3 Gene:SET3 / 853900 SGDID:S000001737 Length:751 Species:Saccharomyces cerevisiae


Alignment Length:493 Identity:102/493 - (20%)
Similarity:156/493 - (31%) Gaps:202/493 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   818 AHSAISSSSRMGL------------ASTDIDPGEETETAPEAEAE-----------DDSVTRCIC 859
            |.:|::::|.:.|            |:|.....||||..|:.:.:           |..:..|||
Yeast    58 AAAALATASTVSLPLKKATEQSAAEAATSTAAKEETENQPQKQPQWPVPDSYIVDPDAGIITCIC 122

  Fly   860 ELTHDDGYMICCDKCSAWQHVDCMGI-DRQNIPEEYMCELCQPRAVDKARARALQRQKRKEHMLL 923
            :|..|||:.|.||.|:.|||..|.|| |....|::|:|..|.||.||...||.:|::  :.::..
Yeast   123 DLNDDDGFTIQCDHCNRWQHAICYGIKDIGMAPDDYLCNSCDPREVDINLARKIQQE--RINVKT 185

  Fly   924 VATQAANGAAA-------VAAGTTLSGGLGSGLPMSEELQHRLASGLNGGFATGTGMSKKSKKTK 981
            |...::|.:|:       .|:.||:|....|.....:...||                  .|:.|
Yeast   186 VEPSSSNNSASNKNNGRDRASSTTISDVGDSFSTDQDNTNHR------------------DKRRK 232

  Fly   982 ENSGSTSTLKKTKKSAVGMGGEKNASGSGTPTGSSGKTSKKSSKRKSKSGGDGSSGGGS------ 1040
            .|..:.|...|.:.::|              ..|.|.||....|....|..|..   |:      
Yeast   233 RNPSNNSIDSKNESASV--------------NSSDGLTSMPKKKEHFLSAKDAY---GAIYLPLK 280

  Fly  1041 ---------SPALTAAEKHAANLRQWIENYEYAVTNHYSPELRARLHAIQKQPSLLQSIQNTENK 1096
                     .|.|   .||..:  .|:..|.:......|.|::                      
Yeast   281 DNVFKSDLIEPFL---NKHMDD--NWVIQYPHKTFKSVSIEVK---------------------- 318

  Fly  1097 ALRQIQQQLSTAGSAEQLEQRAQLIPYAGAKVLISSVDLSPHAP------------------IHE 1143
                                     |||       .:..|...|                  |.|
Yeast   319 -------------------------PYA-------DIAYSRTYPGFTKLGVYLKKDCIKGDFIQE 351

  Fly  1144 LRGKYMLTTQFRTQNPTVNMNTPPPSNYLNSFKAHKTPGQFVFFYQLPGVEAPMQTLRPDGSVPQ 1208
            :.|:......:.|.          |.|:   ::...|..:.|.|:                    
Yeast   352 ILGELDFYKNYLTD----------PRNH---YRIWGTAKRRVIFH-------------------- 383

  Fly  1209 VAQQPPSYLKGPEVCVDTRTYGNDARFVRRSCRPNAEL 1246
              ...|.|       :|.|..||..|::||||:||.||
Yeast   384 --SHWPIY-------IDARLSGNSTRYLRRSCQPNVEL 412

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
upSETNP_001261819.1 PHD_MLL5 856..899 CDD:277025 21/43 (49%)
SET <1221..1273 CDD:214614 13/26 (50%)
SET3NP_012954.3 PHD_MLL5 119..163 CDD:277025 21/43 (49%)
SET 217..722 CDD:225491 53/332 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157346292
Domainoid 1 1.000 58 1.000 Domainoid score I2633
eggNOG 1 0.900 - - E1_KOG1844
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm46856
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR46462
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4489
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
76.960

Return to query results.
Submit another query.