DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment upSET and BYE1

DIOPT Version :9

Sequence 1:NP_001261819.1 Gene:upSET / 39551 FlyBaseID:FBgn0036398 Length:3146 Species:Drosophila melanogaster
Sequence 2:NP_012921.3 Gene:BYE1 / 853865 SGDID:S000001488 Length:594 Species:Saccharomyces cerevisiae


Alignment Length:542 Identity:108/542 - (19%)
Similarity:185/542 - (34%) Gaps:161/542 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   801 YCSYFGQQIA----RSQADDDAHSAISSSSRMGLASTDIDPGEETET--APEAEAEDDSVTRCIC 859
            |..|..|:..    :.:......|||..:.:   :.:..:|.::||.  ..|.:..|:...||:|
Yeast    16 YIEYLLQEETEAPKKKRTKKKVDSAIEKNKK---SDSSQEPRKDTENVRTDEVDEADEGYVRCLC 77

  Fly   860 ----------ELTHDDGYMICCDKCSAWQHVDCMGIDRQNI------PEEYMCELCQP----RAV 904
                      |.:|.|  |:.||.|..|||:.||...:..|      ..:|.||||.|    ...
Yeast    78 GANNENYDAAEYSHGD--MVQCDGCDTWQHIKCMTDGKDTIDGLMSEDSKYYCELCDPSLYAHLE 140

  Fly   905 DKARARALQRQKRKEHMLLVATQAANGAAAVAAGTTLSGGLGSGLPMSEELQHRLASGLNGGFAT 969
            ....|...:.:...:.:........:..|.|.              :.||...:.....:    :
Yeast   141 TSKEAEVSEDEDYHDDVYKPVNDHDDNDADVF--------------LDEESPRKRKRSPD----S 187

  Fly   970 GTGMSKKSKKTKENSGSTSTLKKTKKSAVGMGGEKNASGSGT-----PTGSSGKTSKKSSKRKSK 1029
            ..|:..|||:.|:::||    ||..||.       :|:.|.|     ||....::.|:...|.: 
Yeast   188 AKGIHIKSKQVKKSNGS----KKRNKSI-------DAAKSDTAENEMPTRKDFESEKEHKLRYN- 240

  Fly  1030 SGGDGSSGGGSSPALTAAEKHAANLRQWIENYEYAVTNHYSPE-LRARLHAIQKQPSLLQSIQNT 1093
                             |||..:.|          .:....|| :.|:|:.:.....::...|  
Yeast   241 -----------------AEKMFSTL----------FSKFIVPETIEAKLYELPDGKDVISISQ-- 276

  Fly  1094 ENKALRQIQQQLSTA------GSAEQLEQRAQLIPYAGAKVLISSVDLSPHAPIHELRGKYMLTT 1152
              :....::::|..|      |:.:::........|:..|.. .:::|..|.    :.||..|  
Yeast   277 --EFAHNLEEELYKACLNVEFGTLDKIYTEKVRSLYSNLKDK-KNLELKAHV----VEGKLPL-- 332

  Fly  1153 QFRTQNPTVNMNTPPPSN-YLNSFKAHKTP---GQFVFFYQLPGVEAPMQTLRPDGSVPQVAQQP 1213
                 |..||||....:| .|..||..:..   ..|:       ||.|               ..
Yeast   333 -----NKLVNMNASELANPDLQEFKEKRDKIILENFI-------VEVP---------------DK 370

  Fly  1214 PSYL---KGPEVCVDTRTYGNDARFVRRSCRPNAELQHYFEKGTLHLYIVALTHIRAQTEIT--I 1273
            |.|:   ||.|:..|......|..:.:.|.|             || .|.::...:::.|.|  |
Yeast   371 PMYVKTHKGDELIEDIAEPQEDILYSKDSIR-------------LH-NIDSIDSDKSKIEQTHAI 421

  Fly  1274 RHEPHDLTAVEQKKSHAAVIQP 1295
            ..||...|.:.::..:.|.:.|
Yeast   422 SKEPSPSTIINEESLNCAFLYP 443

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
upSETNP_001261819.1 PHD_MLL5 856..899 CDD:277025 19/58 (33%)
SET <1221..1273 CDD:214614 10/53 (19%)
BYE1NP_012921.3 PHD_Bye1p_SIZ1_like 74..131 CDD:277045 19/58 (33%)
TFS2M 235..354 CDD:128786 29/162 (18%)
SPOC 434..589 CDD:400205 2/10 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4489
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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