DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment upSET and phf20a

DIOPT Version :9

Sequence 1:NP_001261819.1 Gene:upSET / 39551 FlyBaseID:FBgn0036398 Length:3146 Species:Drosophila melanogaster
Sequence 2:XP_021335514.1 Gene:phf20a / 563332 ZFINID:ZDB-GENE-070912-270 Length:932 Species:Danio rerio


Alignment Length:1078 Identity:195/1078 - (18%)
Similarity:351/1078 - (32%) Gaps:362/1078 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   202 HQQQQQHPH-----------ATLQKVTLGSRVATRLQSYVP---------ASPSQIMVQPAQPKY 246
            |.:|..|.:           ..:::|.| .|.|.:..|::|         ||.|.....||:...
Zfish    46 HYRQWSHRYDEWFDWASPYLRPVERVQL-RREARQDDSFIPGFHVNDRVLASWSDCRFYPAKVLA 109

  Fly   247 VNATATTIGGNAALLKKANQKITVKSVSNMSQQQQQQQQQQQQQLLQAQQLKTFITQQQQQQTYK 311
            ||..|:               .|||....:            .|.::...:|.|..:::::.:.:
Zfish   110 VNKDAS---------------YTVKFYDGV------------VQTVKGIHVKPFTKERRKKLSDQ 147

  Fly   312 AGAKAKFVKQTTALSIAALPQQQQQTTYAKQSM-VTTSTPAK----VTKLNSKYVQQQISLPQGT 371
            .|.|.  |.|.....|     |:.:....||:. .|...|.|    ::::|.:         :|.
Zfish   148 NGEKP--VIQQAEKEI-----QENEANGDKQAAGQTNCVPEKDEDGISEVNGE---------EGE 196

  Fly   372 QLQHKASPNVTGGGYLLQQSQAAVGGTIKFVNSHGTVIQQHPQQQQATKRTHYNSSGSSDNEQHA 436
            |::.|...........|::                  |.||...:...|:    .||..:.|:..
Zfish   197 QMRIKVENESVKEERDLEE------------------IGQHNYSKSLVKK----GSGFEEKEEEV 239

  Fly   437 VA---NSSLITDDVMIV------NGTQMTDELSARILQSMAQKSFSQQQRFHQVPATGSGNMPPP 492
            :.   :|:|...:|...      |.|:.||.|:.:..:.:.::.....::..:........:...
Zfish   240 MVKMEDSALFDSNVNFSESTVKRNETEETDVLAQQKKEEVEEQCLVHDKKARRQRIKRKRRLSMA 304

  Fly   493 TQIIYSNSTSNGAAASSPGGNASGNMLLAHYQAAGTKPVSSASFITVTGTPPVTVATTPSVSISS 557
            .:....|.|.:..:.:....|        :.|..|.:|.|             ...|.|     |
Zfish   305 RRSSKKNKTDSEKSHNDGKPN--------NQQTQGKEPDS-------------LHLTQP-----S 343

  Fly   558 HGFASGSAAISSYMSSATAARRQSVSAPS--SRAVSLERKQHHQ-------QLQHDVI------- 606
            :|.::..|...|.....||.|:|:...|:  ||. .|.|...:|       .|.|::.       
Zfish   344 NGTSASQAQCQSETFKPTAVRKQAFHNPNRFSRE-PLYRVIRNQPPPVLSINLDHNLYKCNTPGC 407

  Fly   607 -GGGRKAPTV---IEYYNKHGVNSIVGSSNNLAQSNSMSNLAGPRSNSGSGFATTTPTPATPLHL 667
             ...|||..:   ::||  ||....:...    |:..|.......|:.||.....|         
Zfish   408 SKSFRKAKLLHYHMKYY--HGEECPIEPE----QTREMDKKTTLNSHDGSKKRCVT--------- 457

  Fly   668 TPVNVPVHVEAAPPSSPALVKGSSQPPAQPQQQQQQAHPL-----GPNQLNANDEELYIEEVRPV 727
                       :...:...||..|..|.....|..|..||     ..|||:...:..|.:|    
Zfish   458 -----------SRECARVTVKNRSLAPPTASTQNYQQWPLLKDKTRENQLDDTMQRCYNKE---- 507

  Fly   728 PVLTQDLRLQQLHAIMQDHTYASQQQQQQPQQAAGDTTNPGAAQQVQQPQQWSLGGIGVTVSGSQ 792
                :|.|..::.::.:.:....:|::.              ..:::..::              
Zfish   508 ----RDRRFMEMESVKERNRLKEKQRRD--------------FLRIKLKEK-------------- 540

  Fly   793 GTPTAVGGYCSYFGQQIARSQADDDAHSAISSSSRMGLASTDIDPGEETETAP------EAEAED 851
                          ::|.::.:|:|:.|..||.| .|.:..:::...:..|:|      .:..|.
Zfish   541 --------------KKIRKTTSDEDSISDWSSES-CGWSEDEMEADLDVITSPLSCSSVASTTES 590

  Fly   852 DSVTRCICELTHDDGYMICCDKCSAWQHVDCMGIDRQNIPEEYMCELCQPRAVDKARARALQRQK 916
            ....||:||...::.:|:.|::|..|||..|||:..:|:||.|.|.:|:..:..:.|.|. |||.
Zfish   591 QETVRCVCEADEENDFMLQCEECLYWQHGTCMGLLEENVPERYSCFICRDSSGLERRVRG-QRQS 654

  Fly   917 RK----------EHML---LVATQAANGAAAVAAGTTLSGGLGSGLPMSEELQH--RLASGLNGG 966
            .:          .||.   .:...:......:||...|.|          ::||  .:.|||...
Zfish   655 LRYWYDRDWLSTGHMYGLSFLENYSHQNGKKIAATHQLLG----------DVQHVVEVLSGLQLK 709

  Fly   967 FAT-----------------GTGMSK-KSK-----KTKENSGSTSTLKK---------------- 992
            .:.                 .|..|: |||     ||..:|....|::.                
Zfish   710 ISVLQNQTHPDLKLWRQPWKPTERSRMKSKALHDAKTVSSSAGLETIENKEAFSSSFQDYISSEH 774

  Fly   993 -----------------TKKSAVGMGGEKNASGSGTP------TGSSGKTSKKSSKRKSKSGGD- 1033
                             .|.....:..::..|....|      .|...|||.......||..|: 
Zfish   775 CYQKPQTLYQVLEPRLVLKTRVESLLEDRLHSTERVPMNEQHYNGDMLKTSNSQLFNHSKVIGEK 839

  Fly  1034 ---GSSGGGSSPALTAAEKHAANLRQW-------IENYEYAVTNHYSPELRARLHAIQKQPSLLQ 1088
               |:.|||        :|..|..:||       ||..:..||:        |:..|:::..:|:
Zfish   840 CEAGADGGG--------DKSGAQPQQWKVNLLDHIETVQEEVTH--------RMDFIERELDVLE 888

  Fly  1089 S-------IQNTE-----NKALRQIQQQLSTAGSAEQL 1114
            :       ::..|     .:....|:|.||..|..:|:
Zfish   889 NWLDCTGELEPPEPLDRLPELKHSIKQLLSELGKVQQV 926

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
upSETNP_001261819.1 PHD_MLL5 856..899 CDD:277025 18/42 (43%)
SET <1221..1273 CDD:214614
phf20aXP_021335514.1 MBT 3..68 CDD:327428 3/21 (14%)
TUDOR 90..135 CDD:119391 12/71 (17%)
PHD_SF 595..638 CDD:328929 18/42 (43%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D147824at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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