DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment upSET and Lpt

DIOPT Version :9

Sequence 1:NP_001261819.1 Gene:upSET / 39551 FlyBaseID:FBgn0036398 Length:3146 Species:Drosophila melanogaster
Sequence 2:NP_611847.2 Gene:Lpt / 37795 FlyBaseID:FBgn0263667 Length:1482 Species:Drosophila melanogaster


Alignment Length:1172 Identity:207/1172 - (17%)
Similarity:365/1172 - (31%) Gaps:371/1172 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly  1749 AKHPQQQQQQQQQPVTPVSAATAPAATPSSSESKEDDVSASSTTTPTTR--------TPAKDKPK 1805
            |.|.:::|......|.|  ...:.::.|.||:...|.:..|:..:.:.:        .|.:.||.
  Fly   374 AYHKKKEQNPDYDYVCP--NCKSNSSGPGSSQQTIDSIVLSAMDSSSEQLSLKEIELDPLEGKPT 436

  Fly  1806 QSREDRKLEAILRAIEKMEKQEARGK--KDTRQSSGGKRQASNSPASPNKRNSSNSISEDVETPT 1868
            ......:|..:....:|:.....||:  |......|...|.       ||:.|:......:..||
  Fly   437 MDPSSDELHKLPTGKKKVCLTSVRGRSGKFVLHRMGVMSQI-------NKKRSTRGKGRQLALPT 494

  Fly  1869 STNSAAAAAQRRNKKKRKVSRSLNNNTNGLGSGGGSNNK------RRK------------SIVVE 1915
            .::.            |.:|||:..:..       |:.|      |.|            |:.:|
  Fly   495 ISSD------------RCLSRSMETDLT-------SDKKLLLCSARDKFIQAQDICVMCGSLGIE 540

  Fly  1916 SDGESHALTNSESEDQGQHPQ----------------------SHHSGSEDQAAGLLLA----LA 1954
            ||  |..:|.::. .|..||.                      ....|.::..|.|||.    ::
  Fly   541 SD--SVMITCAQC-GQCYHPYCAGVKPSRGILQKGWRCLDCTVCEGCGKKNDEARLLLCDECDIS 602

  Fly  1955 HNNSSPNEPF--------------------KSPLSQSH----------------SLPATPASVSS 1983
            ::....|.|.                    ::|..:|.                |.|....|.|:
  Fly   603 YHIYCVNPPLETVPTGNWKCSFCTLCQKCGRNPTEKSEFGDSNMLECPSCTSQSSCPVCKVSYSN 667

  Fly  1984 ACLLIEAAMGPLQQQPAPASASPSLAEFKYPPGGAKTKKSLMSSWFQQAEQQHASGLDSLVQAAM 2048
            ..::|:.....|.......|.:..|....|.....|..|...|:          ...:||..|..
  Fly   668 GEMIIQCEHCELWAHFHCDSVNAQLTIDHYDNNVYKCFKCRCST----------RSTNSLADAKF 722

  Fly  2049 SEINGEREQLQRQPQGESLPAPALLKVEQFIHQAESTTAVPAREQLHLPLQNNSSVKKRWLRQAI 2113
                |..:.|...|||.          :.|:|...|:.          |..::.|..:|      
  Fly   723 ----GNEDSLAITPQGS----------KPFVHITASSG----------PSFDSKSGAER------ 757

  Fly  2114 SEETTPVDELQQSQNQSVTATPSPQPVPTVSPLANG-------------FSTPLKKRRLV--VVS 2163
                          |....:...|:..|......:|             .||.:|::|.:  .:.
  Fly   758 --------------NHPTLSGDMPESAPEALHWIDGVCLSESGLGMIKSLSTEIKRKRKMRQALG 808

  Fly  2164 NGTNVESDETHIDVIGEPKD----EAEENVAMTELKVEIENHHQEQDDDVDILRSPSPGTHQIVA 2224
            ||.:.:.:....:.:.:.||    :..||.......:.|      .|:.|:|||..        .
  Fly   809 NGKDGQLEAAAEEALEKYKDGMVWDGTENAIPEGFTISI------NDEGVNILRKK--------R 859

  Fly  2225 EDNLVKIEPEDTSAAADDVKIDVEREESQACDKFEEMVKVKREEEEQREKEIKQLQER-----QE 2284
            :.||.|:.....|.....:|.|  .||:.|.|:...::.:.::::..|:|:..:|.|.     ||
  Fly   860 QRNLQKLGIGGFSVRNRGLKKD--SEETTAVDQINSLMTMDKKKKIIRKKQKNKLIEAYPVYLQE 922

  Fly  2285 --HEQPKVEPA-----------PVEPKLENTVAKAEPKVEPSQEIVS-KKEPTKVEPKPGESLLR 2335
              ..:|.:|..           .::..::....:.|.|...:|:.:: .|.|.|...|....|..
  Fly   923 AFFGKPLLEGGELVMADTDSSDEIDASMKVYFTRPEGKSPANQDTLAVNKSPAKTVKKVKAELKT 987

  Fly  2336 STATV------------TATPTAATIAATTLLDVSKVAFKTRPPLKLEDEPQKKKPKLESILPAP 2388
            ...||            ..|...:.:......::|...|..|.||.....|  ..|:|:  :...
  Fly   988 ENKTVFIQQMPMGIQNKNGTTPVSNVFDPLQAEISNTVFANRHPLDALASP--NVPELD--MANS 1048

  Fly  2389 VATVPPVSVPPIPAASNATTSAVTNTAAASLTTTTAPSSTKNLTEHDIQERLLSFHAANISYL-- 2451
            |:|||...|...|         :..:.|..:.:...|:...       ||:  .||  |..||  
  Fly  1049 VSTVPSAEVIEKP---------MRESPAVLVDSFMVPNQLP-------QEQ--KFH--NQLYLGG 1093

  Fly  2452 -----------------QSRNKKATAAL-------TSASPSQK-------SNSSSGGSGTESKKS 2485
                             |:.||:....:       |...|.::       :.:.:.|:...::|.
  Fly  1094 NTLVNPAQQLQFRQQAPQNANKQNMQTIMSQVVLQTEKRPEEEQKVVEPVTETLNAGTQKTAEKM 1158

  Fly  2486 SKDKDEK-------------------------RDKEKQ-LKKSKKEKKKSKDKEKQKAAVNVNST 2524
            .||:|..                         .|:.|| ||:.:....:.|....|||..|.::.
  Fly  1159 RKDEDLGLMATISAVLYANTEHPNLKELFPIWNDRCKQILKRWRSLCNEKKAPFLQKAKDNRSAL 1223

  Fly  2525 SQIVDTKKKTTQPSKPDSKSSIAPV-LVPPSL-------------------------PVATANGK 2563
            .|..: :.|...|.||..:..:..| ..||.|                         ..|.:|..
  Fly  1224 RQRRE-QNKIPMPPKPQKQEEMGRVWKQPPKLKEDQPNMFVTYNGNAYDMGNYVGGSAQAASNNP 1287

  Fly  2564 TKHTAYNNVDQ-------QQQQQMRRRTMSMCITPVTPTPVVTPSPLHGTPP-STKKRQTNFEQE 2620
            ..|....||:.       .|:.|:.....|..........:...:.::||.| ..||.:...::.
  Fly  1288 NPHHVMPNVNDNLVIKATMQRTQVHTTAASTLKMTTVDNRLELNTAVYGTEPIGDKKLRNLLQKN 1352

  Fly  2621 LTKPNSQILSSSILL-NSSKGLGL----------PLAAPTVVSVPTAVQQ-QQHRKENNHQEATP 2673
            .|:|.....:|.:.| |....||:          |:.:.:..|.|:..:. :|..|....||||.
  Fly  1353 STEPMLMGANSDLFLGNDVMRLGMMQNTPITQNNPMLSISGKSQPSEGRSLEQDVKLGEPQEATS 1417

  Fly  2674 AS 2675
            ::
  Fly  1418 SA 1419

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
upSETNP_001261819.1 PHD_MLL5 856..899 CDD:277025
SET <1221..1273 CDD:214614
LptNP_611847.2 ePHD1_KMT2C_like 109..191 CDD:277135
PHD1_KMT2C_like 205..250 CDD:276984
PHD2_KMT2C_like 252..298 CDD:276985
PHD_SF 337..392 CDD:304600 5/19 (26%)
PHD4_KMT2C_like 530..578 CDD:276987 9/50 (18%)
PHD5_KMT2C_like 580..625 CDD:276988 7/44 (16%)
PHD6_KMT2C_like 657..707 CDD:276989 10/49 (20%)
NHP6B 1101..>1237 CDD:227935 23/136 (17%)
HMG 1173..1231 CDD:197700 11/58 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4489
SonicParanoid 00.000 Not matched by this tool.
11.030

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