DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment upSET and set3

DIOPT Version :9

Sequence 1:NP_001261819.1 Gene:upSET / 39551 FlyBaseID:FBgn0036398 Length:3146 Species:Drosophila melanogaster
Sequence 2:NP_594837.1 Gene:set3 / 2541899 PomBaseID:SPAC22E12.11c Length:859 Species:Schizosaccharomyces pombe


Alignment Length:1127 Identity:202/1127 - (17%)
Similarity:381/1127 - (33%) Gaps:377/1127 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   856 RCICELTHDDGYMICCDKCSAWQHVDCMGIDRQNIPEEYMCELCQPRAVDKARARALQ--RQKRK 918
            ||:|....|||:.|.|:.|..|||..|:.||..|:||:|.||.||||.:|..:|..:|  |.:|:
pombe     5 RCVCPFEDDDGFTIQCESCEVWQHAVCVNIDANNVPEKYFCEQCQPRPIDADKAHKIQLARLQRE 69

  Fly   919 EHM--LLVATQAANGAAAVAAGTTLSGGLGSGLPMSEELQHRLASGLNGGFATGTGMSKKSKKTK 981
            |..  :|..::::|.                        :.|.:.|.||...|.:...::...|.
pombe    70 EEQSRILSRSRSSNN------------------------KRRTSFGKNGASPTHSASPRQGNNTG 110

  Fly   982 ENSG--STSTLKKTKKSAVGMGGEKNASGSGTPTGS-SGKTSKKSSKRKSKSGGDGSSGGGSSPA 1043
            .|..  |.||               |:|.||:...| :|.|...:....|::....|:...:.|.
pombe   111 ANGALFSQST---------------NSSNSGSYRNSVTGATLPNAHAPHSQNRRRRSNHLNNPPE 160

  Fly  1044 LTAAEKHAANLRQWIENYEYAVTNHYSPELRARLHAIQKQPSLLQSIQNTENKALRQIQQQLSTA 1108
            ....|  |:|      .|.|:....|.|        ::.......:::.::|..|:.:.:     
pombe   161 APITE--ASN------EYVYSFHLEYVP--------LESNTFSASALEYSKNLDLKNLDE----- 204

  Fly  1109 GSAEQLEQRAQLIPYAGAKV------LISSVDLSPHAPIHELRGKYMLTTQFRTQNPTVNMNTPP 1167
              :|.|....|::|.:.:|.      |:|:.::.|:.||.|::|:.....::::.          
pombe   205 --SEVLMDGCQVVPISSSKFCCSRFGLVSTCEIPPNTPIMEVKGRVCTQNEYKSD---------- 257

  Fly  1168 PSNYLNSFKAHKTPGQFVFFYQLPGVEAPMQTLRPDGSVPQVAQQPPSYLKGPEVCVDTRTYGND 1232
            |.|..|...|   |...|||               |.:              .::.||:|..|:.
pombe   258 PKNQYNILGA---PKPHVFF---------------DSN--------------SQLVVDSRVAGSK 290

  Fly  1233 ARFVRRSCRPNAELQHYFEKGT---LHLYIVALTHIRAQTEI------TIRHEPHDLTA------ 1282
            |||.|:.|:.|:.:...:..|:   ....:.:.|||..:|||      .|.|.......      
pombe   291 ARFARKGCQSNSVVSSVYMNGSNSVPRFILYSTTHIAPETEIIGDWTLDISHPFRQFAPGMSRPS 355

  Fly  1283 --VEQKKSHAAVIQP--TSTRCACDMGSDCLFALPLAVQQQLQAPPTQPRSSHRNKAAAAAAAAA 1343
              :|:.:..:.|:..  :...||.....:|:|                   |...|...||..|:
pombe   356 FNMEELELLSEVLSTFLSFNECASQDKKNCVF-------------------SRVTKYIKAARRAS 401

  Fly  1344 AANSAAAIQLTMGLGVGATVAAGASVLPNSRNRSTSSSGESSQMGLNSPQLGQLNLGFKTSVTAT 1408
            .||..:..                                                  |..::.|
pombe   402 TANRVSVA--------------------------------------------------KDRLSLT 416

  Fly  1409 SLTAPVPGVHCNNSGGSSSSSNNSCSVSMSSVLHDSGICTSSSSPSVSIPSPT-PTQMQSPTLQQ 1472
            ..:.|                                   |:.||:.|:|.|: ||.:.:.:|::
pombe   417 PSSTP-----------------------------------STPSPAESLPQPSNPTSVYAKSLKE 446

  Fly  1473 HPQQIPQQQLSLLQRSPTQQHQQQILAALPTP------MLTPMLSPQL-PKPAQQQAHVVLPQSQ 1530
            .  .:.:.:||:||:.|.       :.:|||.      ::.|.|.|.: .|...:.....||..:
pombe   447 F--WLDKYRLSILQKWPA-------VKSLPTESVGIDVVMEPKLQPSVKEKKPTKDLQSPLPSVE 502

  Fly  1531 QTSLLQQQQSQQSQ----------EPLAVIAAAAAAQQPMATYFVRQPQQQQQQQSPKPQALVAQ 1585
            :.|..:.:::..:.          :.|:.|:..||.|........::|::.....:..|...|.:
pombe   503 EDSSNRDKKTDIADLHTDSKVGIADVLSPISPDAALQSDGPLKKAKEPEESSITPTTPPSFNVGE 567

  Fly  1586 QQHVVGAQQQQHFLQQQQKQQQQQMADEARMAVSALQTLHAAPTSHIVSPIKVAAVQQQSQPQQQ 1650
                                              :|....|:|..|   |.....:..::.|.::
pombe   568 ----------------------------------SLSRRSASPLQH---PRTSPDMLDKTSPCKR 595

  Fly  1651 QQNTHQQPHNQQAVQQQSNQLQQQQSQQPNYPQSPQRQQKPQPVQHQPQIVISTGAQ------AI 1709
            ...|....|.:.........:::::|...::...|...::...::.:|:...:.|.:      :.
pombe   596 GLGTITTVHKKHGSVDHLPSVKRRRSIANDFHGKPDYNKRSLSIERKPEAFKTKGDRPHKVHPSF 660

  Fly  1710 PATMPTKL----SSPTKSAAPVISNNNITVSAQSSVVGGKKTPAKHPQQQQQQQ----------- 1759
            .....:||    ||..||.: :..|...||..:|.|...:::...:..:|...:           
pombe   661 HRNSDSKLKLEPSSKEKSGS-MFFNTLRTVKDKSHVHDTQRSSDVNFSRQNGTRSHSPSVSPVGF 724

  Fly  1760 ---QQPVTPVSAATAPAATPSSSESKEDDVSASSTTTPTTRTPAKDKPKQSREDRKLEAILRAIE 1821
               :.|||.....||||...:|..      :..:...||......|....:.:|..         
pombe   725 SFDKSPVTTPPLPTAPAPVITSRH------ALVNNQFPTNNPNILDHKANNGDDIS--------- 774

  Fly  1822 KMEKQEARGKKDTRQSSGGKRQASNSPASPNKRNSSNSISEDVETPTSTNSAA---------AAA 1877
                                 .|.|:..|.||.| ||.:...|..|::|:::|         :.:
pombe   775 ---------------------NALNTSRSENKPN-SNLVQGSVVKPSNTSASALPTSAPKKLSLS 817

  Fly  1878 QRRNKKKRKV--SRSLNNNTNG 1897
            :.|.::::.:  .:|.:|..:|
pombe   818 EYRQRRQQNILHQQSKDNQAHG 839

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
upSETNP_001261819.1 PHD_MLL5 856..899 CDD:277025 21/42 (50%)
SET <1221..1273 CDD:214614 17/60 (28%)
set3NP_594837.1 PHD_MLL5 5..48 CDD:277025 21/42 (50%)
SET 215..343 CDD:214614 36/169 (21%)
SET 284..826 CDD:225491 114/729 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 69 1.000 Domainoid score I2693
eggNOG 1 0.900 - - E1_KOG1844
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - oto101564
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR46462
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4489
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.030

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