DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment upSET and phf20l1

DIOPT Version :9

Sequence 1:NP_001261819.1 Gene:upSET / 39551 FlyBaseID:FBgn0036398 Length:3146 Species:Drosophila melanogaster
Sequence 2:XP_012820619.2 Gene:phf20l1 / 100145157 XenbaseID:XB-GENE-5799581 Length:1041 Species:Xenopus tropicalis


Alignment Length:940 Identity:174/940 - (18%)
Similarity:340/940 - (36%) Gaps:250/940 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   354 TKLNSKYVQQQISLPQGTQLQHKASPNVTGGGYLLQQSQAAVGGT----IKFVNSHGTVIQQHPQ 414
            |.:||...:::....:|  |..|..|.:.....:.|:.:.....:    :.|..:....||..|.
 Frog   189 TSINSNKDKEERKWGKG--LSKKEEPVLCKALGIFQKEEEEPTSSRNLDVAFSETPKICIQPPPD 251

  Fly   415 QQQATKRTHYNSSGSSDNEQHAVAN--SSLITDDVMIVNGTQMTDELS---ARILQSMAQKSFSQ 474
            :....::.   |..||...:.|..|  :.|:....:.::..:..|.:|   :|:.::::.|...|
 Frog   252 ELLLKRKL---SQTSSFQAKRARLNKITGLLASKAVSLDDAEKKDRVSEKASRLEEAISPKPQKQ 313

  Fly   475 QQRFHQVPATGSGNMPPPTQIIYSN----STSNGAAASSPGGNASGNMLLAHYQAAGTKPVSSAS 535
            .:          |::..|...:...    :.|:|.|.:.......|:       |:|.|.:..:.
 Frog   314 NE----------GDISHPCSTLKPTLLPAALSSGKARNRKDKRDLGD-------ASGCKKIPMSP 361

  Fly   536 FITVTGTPPVTVATTPSVSISSHGFASGSAAISSYMSSATAARRQSVSAPSS---------RAVS 591
            .:     |.:|..:...||::..            :......|.|..|.|.|         :...
 Frog   362 IV-----PDLTQGSAAPVSLAKS------------LGRKNRRRPQRSSNPLSEDFPCPSFIQGKG 409

  Fly   592 LERKQHHQQ------LQHDVIGGGRKA----------PT-----------VIEYYNKHGVNSIVG 629
            |:|..|.||      ::.|......|:          ||           :.....|..:.||..
 Frog   410 LQRGPHTQQGLSVATVRSDACVPPEKSEPLDLSRSAEPTAPLLPESSVRVICPSKEKENIQSISC 474

  Fly   630 SSNNLAQSNSMSNLAGPRSNSGSGFATTTPTPATPLHLTPVNVPVH-VEAAPPSSPALVKGSSQP 693
            ||..:|.|:     ..|.|            ||:..|       :| :::|.|:|....||:.:.
 Frog   475 SSKAVADSS-----GAPAS------------PASSPH-------IHALKSALPNSVKPAKGNRKK 515

  Fly   694 PAQPQQQQQQAHPLG-----PNQLN-----------------ANDEELYIEEVRPVPVLTQDLRL 736
            .:...:..::..|.|     ||.:.                 ..::::.|||........:|...
 Frog   516 KSSASEGTEKPLPAGGTDKAPNNVQEKVTKKGNEDKHSDVGVVKEKKVKIEEKMTSVGKKKDKDK 580

  Fly   737 QQLHAIMQDHTYASQQQQQQPQQAAGDTTNPGAAQQVQQPQQWSLGGIGVTVSGS---QGTPTAV 798
            .:.....:||:.:.|:::::.::.:.........:.....|..:...:.:|.||:   :.|.|..
 Frog   581 DRKEKKEKDHSKSKQKKKKKKKKKSKQHEYLDFEEASMDFQDRTSSPVTLTSSGTLSLRNTLTVK 645

  Fly   799 GGYCSY---------FGQQIARSQADDDAHSAISSSSRMGLASTDIDPGEETETAPEAEAEDD-- 852
            .....:         .|:.::..:..||      ||:...:.|.| :..:|.::|...|::|:  
 Frog   646 NNSFQFPRAILSVDLTGENLSDMEFLDD------SSTESLILSGD-EYNQEFDSANFEESQDEEE 703

  Fly   853 ---SVTRCICELTHDDGYMICCDKCSAWQHVDCMGIDRQNIPEEYMCELCQ--PRAVDKARARAL 912
               .:.||:||:..::|:||.|::|..|||..|||:..::|||:|:|.:|.  |.....|:.|..
 Frog   704 AANEIVRCVCEIDEENGFMIQCEECLCWQHSACMGLLEESIPEQYVCYICSDPPGQRWSAKYRYD 768

  Fly   913 QRQKRKEHML----------------LVATQAANGAAAVAAGTTLSGGLGSGLPMSEELQH---R 958
            :....|.|:.                :|:|.  :..|.:...|.:..||.....:.:...|   |
 Frog   769 KDWFNKGHLCGLSFVNENYSYLNAKKIVSTH--HLVADIFNITEIMYGLQLKFGILKNKDHPDLR 831

  Fly   959 LASGLNGGFATGTGMSKKSKKTKE-----------------NSGSTSTLKKTKKSAV-------- 998
            |.:        ..|..|:..:|.|                 :.||.|.|.|:.::.:        
 Frog   832 LWA--------CPGKQKECGETNEKRTFCINQLDRTTCGQNHVGSPSELWKSDETYITSEHSYQK 888

  Fly   999 GMGGEKNASGSGTPTGSSGKTSKK----SSKRKSKSGGDGSSGGGSSPALTAAEKHAANLRQWIE 1059
            .:||.   .....|||.:|...:.    :::::...|...:...||   |....::..|:   :|
 Frog   889 PLGGN---LACNVPTGPAGCNEEAGAGLANEKREILGDTKTCLQGS---LRTERRNEQNV---LE 944

  Fly  1060 NYEYAVT-NHYSPELRARLHAIQKQPSLLQSIQNTEN----------KALRQIQQQLSTAGSAE- 1112
            ..:.||: .....|.:...| :|.|.:||..|:|.:|          |.:..::..|...|..| 
 Frog   945 ENKVAVSYERKGMEEQVDSH-LQWQLNLLAHIENEQNEVSSRMDLIEKEVDVLESWLDFTGELEP 1008

  Fly  1113 --------QLEQR-AQLIPYAGAKVLISSV 1133
                    ||::| .||:...|....|:::
 Frog  1009 PDPLGRLPQLKRRMKQLLMDMGKVQQIATI 1038

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
upSETNP_001261819.1 PHD_MLL5 856..899 CDD:277025 20/42 (48%)
SET <1221..1273 CDD:214614
phf20l1XP_012820619.2 MBT 12..90 CDD:418456
Tudor_PHF20L1 108..166 CDD:410525
PHD20L1_u1 311..368 CDD:374703 11/78 (14%)
PHA03247 <358..503 CDD:223021 32/185 (17%)
PHD_PHF20L1 710..755 CDD:277103 21/44 (48%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D147824at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4489
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.040

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