DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG17359 and zgc:173720

DIOPT Version :9

Sequence 1:NP_648679.1 Gene:CG17359 / 39549 FlyBaseID:FBgn0036396 Length:339 Species:Drosophila melanogaster
Sequence 2:NP_001107078.1 Gene:zgc:173720 / 566529 ZFINID:ZDB-GENE-080218-21 Length:320 Species:Danio rerio


Alignment Length:308 Identity:78/308 - (25%)
Similarity:115/308 - (37%) Gaps:106/308 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 QEPVLATMLRECSGCSVHK------EDGMPQFICVECAEAVRNAYRLRR--------------QC 78
            ::|...|...:...||.|.      ..|...|.|.:|.::.|.:..|::              ||
Zfish    90 EKPFTCTQCGKSFSCSSHLNLHMMIHTGEIPFTCTQCGKSFRKSSHLKKHMMSHTGEKPFTCTQC 154

  Fly    79 RKSHQYFEQLRLMMKELDDIEYCLNIGDNIEPQMPVSVMEAGKTPETSEPLLVELVQVKYMPPEP 143
            .||   |.|.....|.:.     ::.|:.     |.:..:.||:          ..|:.::    
Zfish   155 GKS---FSQSSSRNKHMR-----IHTGEK-----PFTCTQCGKS----------FSQLSFL---- 192

  Fly   144 KPISSPLPDNNEHKLAQSYSPAKTPHNKSKRRARSYSDNDSWSPDSELEHEDDDKIWNASKRGKP 208
                      |.|.:.         |...|                                   
Zfish   193 ----------NHHMMI---------HTGEK----------------------------------- 203

  Fly   209 KRVPGPYRCKLCTQSFTQKQNLEIHMRIHTGERPYKCSLCPRSFAQKGNLQSHTRCHTGERPFGC 273
                 |:.|..|.:||::..|...||||||||:|:.|:.|.:|::|..:|..|.|.||||:||.|
Zfish   204 -----PFTCPQCGKSFSKSSNFNQHMRIHTGEKPFTCTQCGKSYSQSSHLNKHIRIHTGEKPFTC 263

  Fly   274 PNCPKRFRQVGQLQVHTRTHTGEQPFKCSKCQQSFKQLNGLQKHMSAH 321
            ..|.|.|..:..|..|.|.||||:||.|::|.:||.||..|..||..|
Zfish   264 TQCGKCFTCISNLNQHMRIHTGEKPFICTQCGKSFSQLTSLNYHMKFH 311

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17359NP_648679.1 zf-AD 6..88 CDD:285071 16/73 (22%)
zf-C2H2 215..237 CDD:278523 8/21 (38%)
C2H2 Zn finger 217..237 CDD:275368 8/19 (42%)
zf-H2C2_2 229..254 CDD:290200 13/24 (54%)
C2H2 Zn finger 245..265 CDD:275368 7/19 (37%)
zf-H2C2_2 257..282 CDD:290200 13/24 (54%)
C2H2 Zn finger 273..293 CDD:275368 7/19 (37%)
zf-H2C2_2 286..310 CDD:290200 13/23 (57%)
C2H2 Zn finger 301..321 CDD:275368 9/19 (47%)
zgc:173720NP_001107078.1 C2H2 Zn finger 67..87 CDD:275368
zf-H2C2_2 79..104 CDD:290200 2/13 (15%)
C2H2 Zn finger 95..115 CDD:275368 4/19 (21%)
zf-C2H2 121..143 CDD:278523 5/21 (24%)
C2H2 Zn finger 123..143 CDD:275368 4/19 (21%)
zf-H2C2_2 135..160 CDD:290200 6/27 (22%)
COG5048 <147..307 CDD:227381 64/245 (26%)
C2H2 Zn finger 151..171 CDD:275368 7/27 (26%)
zf-H2C2_2 163..188 CDD:290200 5/44 (11%)
C2H2 Zn finger 179..199 CDD:275368 5/52 (10%)
zf-H2C2_2 192..215 CDD:290200 8/85 (9%)
C2H2 Zn finger 207..227 CDD:275368 8/19 (42%)
zf-H2C2_2 219..244 CDD:290200 13/24 (54%)
C2H2 Zn finger 235..255 CDD:275368 7/19 (37%)
zf-H2C2_2 247..272 CDD:290200 13/24 (54%)
C2H2 Zn finger 263..283 CDD:275368 7/19 (37%)
zf-H2C2_2 275..300 CDD:290200 13/24 (54%)
C2H2 Zn finger 291..311 CDD:275368 9/19 (47%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24390
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.100

Return to query results.
Submit another query.