DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG17359 and Zkscan4

DIOPT Version :9

Sequence 1:NP_648679.1 Gene:CG17359 / 39549 FlyBaseID:FBgn0036396 Length:339 Species:Drosophila melanogaster
Sequence 2:NP_001034204.1 Gene:Zkscan4 / 544922 MGIID:3649412 Length:480 Species:Mus musculus


Alignment Length:327 Identity:85/327 - (25%)
Similarity:133/327 - (40%) Gaps:88/327 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 RLRRQCRK-----SHQYFEQLRLMMKELDDIEYCLNIGDNIEPQMPVSVMEAGKTPETSEPL--L 130
            |||..||:     .|...:.|.|::     :|..|.|   :..::...|.|  :.|::.|.:  |
Mouse    71 RLRELCRQWLRPDMHSKEQILELLV-----LEQFLTI---LPGELQTWVRE--QHPDSGEEVVAL 125

  Fly   131 VELV--QVKYMPPEPK-------------PISSPLPDNN-----------EHKLAQSY--SPAKT 167
            :|.:  |:...||:..             .:.:|..|:.           :|:..:|.  ||.:.
Mouse   126 LEYLDRQLDDTPPQVSTGEWSRELLCCKVAVVTPSQDSQSSHCQAMKSLFKHESQESLECSPLQA 190

  Fly   168 ------PHNKSKRRARSYSDNDSWS------------PDSELEHEDDDKIWNASKRG-------- 206
                  |..:...||..|.|.....            |......|.:.|:..|.|..        
Mouse   191 RGLEMKPETRDLPRAEEYRDQKPEQTVCFLGEDTVPIPTGAEASEQEGKLQTAQKSATGTRRHFC 255

  Fly   207 --------------KPKRV---PGPYRCKLCTQSFTQKQNLEIHMRIHTGERPYKCSLCPRSFAQ 254
                          |.||:   ..||.|:.|.::|.....|.||.|:||||:||:|..|.:.|:.
Mouse   256 CECGKSFAQSSGLTKHKRIHTGEKPYECEDCGKTFIGSSALVIHQRVHTGEKPYECEECGKVFSH 320

  Fly   255 KGNLQSHTRCHTGERPFGCPNCPKRFRQVGQLQVHTRTHTGEQPFKCSKCQQSFKQLNGLQKHMS 319
            ..||..|.|.||||:|:.|.:|.|.|.|...|..|.:.||||:||:|:.|.::|::.:.|.:|..
Mouse   321 SSNLIKHQRTHTGEKPYECDDCGKTFTQSCSLLEHHKIHTGEKPFQCNLCGKAFRRSSHLLRHQR 385

  Fly   320 AH 321
            .|
Mouse   386 IH 387

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17359NP_648679.1 zf-AD 6..88 CDD:285071 6/19 (32%)
zf-C2H2 215..237 CDD:278523 8/21 (38%)
C2H2 Zn finger 217..237 CDD:275368 7/19 (37%)
zf-H2C2_2 229..254 CDD:290200 13/24 (54%)
C2H2 Zn finger 245..265 CDD:275368 7/19 (37%)
zf-H2C2_2 257..282 CDD:290200 13/24 (54%)
C2H2 Zn finger 273..293 CDD:275368 7/19 (37%)
zf-H2C2_2 286..310 CDD:290200 11/23 (48%)
C2H2 Zn finger 301..321 CDD:275368 5/19 (26%)
Zkscan4NP_001034204.1 SCAN 47..155 CDD:128708 20/93 (22%)
SCAN 47..135 CDD:280241 18/73 (25%)
zf-C2H2 253..275 CDD:278523 3/21 (14%)
C2H2 Zn finger 255..275 CDD:275368 3/19 (16%)
zf-H2C2_2 268..290 CDD:290200 7/21 (33%)
C2H2 Zn finger 283..303 CDD:275368 7/19 (37%)
zf-H2C2_2 295..320 CDD:290200 13/24 (54%)
COG5048 <307..471 CDD:227381 33/81 (41%)
zf-C2H2 309..331 CDD:278523 8/21 (38%)
C2H2 Zn finger 311..331 CDD:275368 7/19 (37%)
zf-H2C2_2 323..348 CDD:290200 13/24 (54%)
C2H2 Zn finger 339..359 CDD:275368 7/19 (37%)
zf-H2C2_2 351..376 CDD:290200 11/24 (46%)
zf-C2H2 365..387 CDD:278523 6/21 (29%)
C2H2 Zn finger 367..387 CDD:275368 5/19 (26%)
C2H2 Zn finger 422..442 CDD:275368
zf-H2C2_2 434..459 CDD:290200
C2H2 Zn finger 450..470 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

Return to query results.
Submit another query.