DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hsc70-1 and Hspa12a

DIOPT Version :9

Sequence 1:NP_524063.1 Gene:Hsc70-1 / 39542 FlyBaseID:FBgn0001216 Length:641 Species:Drosophila melanogaster
Sequence 2:XP_017444569.1 Gene:Hspa12a / 307997 RGDID:1305531 Length:691 Species:Rattus norvegicus


Alignment Length:665 Identity:144/665 - (21%)
Similarity:233/665 - (35%) Gaps:215/665 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LPAVGIDLGTTYS-----------CVGVFQHGKVEIIANDQG--NRTTPSYVAFTESERL--IGD 53
            |..|.||.|||.|           |:.|.:..:    ..|.|  |:.||:.:..|...:.  .|.
  Rat    72 LVVVAIDFGTTSSGYAYSFTKEPECIHVMRRWE----GGDPGVSNQKTPTTILLTPERKFHSFGY 132

  Fly    54 AAKN-QVAMNPNNTIFDAKR-LIGRRF-------DDATVQSDMKHWPFEVFAENGKPRIRVEYKG 109
            ||:: ...::||    :||: |...:|       .|.|:.:|:.       |.|||....:|...
  Rat   133 AARDFYHDLDPN----EAKQWLYLEKFKMKLHTTGDLTMDTDLT-------AANGKKVKALEIFT 186

  Fly   110 ERKSFYPEEVSSMVLTKMRETAEAYLGGTVTDAVVTVPAYFNDSQRQATKDAGAIAGL------N 168
            ....::.|:    .|.::.:.|.:....:....|:||||.:....:|..::|...|||      .
  Rat   187 YALQYFKEQ----ALKELSDQAGSDFENSDVRWVITVPAIWKQPAKQFMREAAYQAGLASPENSE 247

  Fly   169 VLRIINEPTAA------------------AIAYGLDKQGT-----------SERN---------- 194
            .|.|..||.||                  |:..|.....|           ..||          
  Rat   248 QLIIALEPEAASIYCRKLRLHQMIELSSKAVVNGYSASDTVGAGFAQAKEHVRRNRQSRTFLVEN 312

  Fly   195 --------------VLIFDLGGGTFDVSV--LTIEDGIFE--VKATAGDTHLGGEDFD-NRLV-- 238
                          .::.|.||||.|::|  :.:.:|..:  .|||.|.....|.|:: .:|:  
  Rat   313 VIGEIWSELEEGDKYVVVDSGGGTVDLTVHQIRLPEGHLKELYKATGGPYGSLGVDYEFEKLLCK 377

  Fly   239 ---NHFVQEFQRKHKKDLGQNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYT----- 295
               ..|:::|:.|       ...|...|..|.|..||..:......:.|...|..:|:|.     
  Rat   378 IFGEDFIEQFKIK-------RPAAWVDLMIAFESRKRAAAPDRTNPLNITLPFSFIDYYKKFRGH 435

  Fly   296 SVTRARFEELNGD-------------------LFRGTMEPVAKALRD--AKMDKGQIHDIVLVGG 339
            ||..| ..:.|.|                   ||:.|::.:.:.|||  .|.:...:..:.||||
  Rat   436 SVEHA-LRKSNVDFVKWSSQGMLRMSPDAMNALFKPTIDSIIEHLRDLFQKPEVSTVKFLFLVGG 499

  Fly   340 STRIPKVQRLLQDFFNGK-------ELNKSI-------NPDEAV--------AYGAAVQAAILHG 382
            ....|.:|:.:|..|..|       ::..:|       ..|.||        .||..|....:.|
  Rat   500 FAEAPLLQQAVQAAFGDKCRIIIPQDVGLTILKGAVLFGLDPAVIKVRRSPLTYGVGVLNRYVEG 564

  Fly   383 DKSEAVQDLLLLDVTP---------LSLGIETAGGVMTTLIKRNTTIPTKQTQIFTTYADNQPGV 438
              ....:.||:.|.|.         :|.....|.|   .|:||:.| |.|.:|:.         :
  Rat   565 --KHPPEKLLVKDGTRWCTDVFDKFISADQSVALG---ELVKRSYT-PAKPSQLV---------I 614

  Fly   439 LIQVFEGERAMTRDNNSL---------GKFEL------SAIPPAPRGVPQVEVTFDIDANGILNV 488
            :|.::..|    .|:.|.         |...|      .|..||.|.:..:....|.:    :..
  Rat   615 IINIYSSE----NDDVSFITDPGVKKCGTLRLDLTGTSGAAVPARREIQTLMQFGDTE----IKA 671

  Fly   489 TALEKSTGKENRITI 503
            ||::.:|.|..::.|
  Rat   672 TAVDIATSKSVKVGI 686

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hsc70-1NP_524063.1 PTZ00009 1..641 CDD:240227 144/665 (22%)
HSPA1-2_6-8-like_NBD 6..381 CDD:212675 112/515 (22%)
Hspa12aXP_017444569.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0443
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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