DRSC/TRiP Functional Genomics Resources

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Protein Alignment ssp2 and Nxf1

DIOPT Version :9

Sequence 1:NP_001287065.1 Gene:ssp2 / 39540 FlyBaseID:FBgn0036389 Length:982 Species:Drosophila melanogaster
Sequence 2:NP_058093.2 Gene:Nxf1 / 53319 MGIID:1858330 Length:618 Species:Mus musculus


Alignment Length:603 Identity:115/603 - (19%)
Similarity:191/603 - (31%) Gaps:242/603 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   296 TFKRPTASA------TTADET-------QVLTGRQMNTTFTDGCNTPEGRCETPENIDRKLALLT 347
            |.:|..|.|      |:.|.|       .:..||:.:.|:.  .:..:.:|..|.|         
Mouse    94 TVRRDRAPAERGGAGTSQDGTTKNWFKITIPYGRKYDKTWL--LSMIQSKCSVPFN--------- 147

  Fly   348 MESSTPLT---TNMRSHCYHNNNNNNKA--GYTPTLKGRGDMNLSPIVGATPQKPTGTAPGRLNN 407
                 |:.   .|.|:|.:..:.....|  |....::.|.:..:|.|:.|:      ..|..:.|
Mouse   148 -----PIEFHYENTRAHFFVEDATTASALKGVNHKIQDRENRRISIIINAS------APPYTVQN 201

  Fly   408 TFEPVAKTAPFNGEKFVLDTMELLEQIEQPLDGTYNLQMSEQHRQMQCVMDL--AEAEVEMLAQQ 470
            ..:|                    |||||     ..|.||:::...|..:||  ..::.:::||.
Mouse   202 ELKP--------------------EQIEQ-----LKLIMSKRYDGNQQALDLKGLRSDPDLVAQN 241

  Fly   471 GD----------------EEQFENMLA-------------------ELGKVNTLN--EEQLKMQK 498
            .|                ||....:|:                   :...:.|||  ..:||.::
Mouse   242 IDVVLNRRSCMAATLRIIEENIPELLSLNLSSNRLYKLDDMSSIVQKAPNLKTLNLSGNELKTER 306

  Fly   499 SLDTIK----------RRFHRDE--------AEAEEREEELQQSAAEKVDTPVLNQSHSSS---- 541
            .||.||          |....|.        :...||..:|.:....::..|:.....:.:    
Mouse   307 ELDKIKGLKLEELWLDRNPMCDNFGDQSSYISAIRERFPKLLRLDGHELPPPISFDVEAPTMLPP 371

  Fly   542 -NSSGGGGERLLSRRSR-------LYDDVN----LSAMHGSNGSSTS----------TNSASFIV 584
             ..|..|.|.|.|...|       :||..:    |.|.|.....|.|          .|.|.::.
Mouse   372 CKGSYFGTENLKSLVLRFLQQYYVIYDSGDRQGLLYAYHDGACCSLSIPYNPQNPVRKNLAEYVK 436

  Fly   585 QRRDMPQVEQPAPDPDPEPAEEPPKSQVTAEIDPASYKLPERRERDRDRFKTIKISKEMRLQPEI 649
            ..|::.::::|.                                   .||:.:   |..||.   
Mouse   437 DSRNVKKLKEPT-----------------------------------QRFRLL---KHTRLN--- 460

  Fly   650 IVPCIDDEPQQLEDEQKQLVE--------------DVRYEEDQRQGSPPGRLSRRDQTTAISNNA 700
            :|..:::.|:...|....:|:              .|..|.|.:.         ||...|.:...
Mouse   461 VVAFLNELPKTQHDVNAFVVDISAQTSTLLCFSVNGVFKEVDGKS---------RDSLRAFTRTF 516

  Fly   701 DA-SASN----------YLTYKKPKEKSLIQRRPQQQEAPLLAEPAPASTLPQPRSLSRPRYISG 754
            .| .|||          ::....|:|   |||      |..::.|.|:|: |.| :|| |.....
Mouse   517 IAVPASNSGLCIVNDELFVRNASPEE---IQR------AFAMSAPTPSSS-PVP-TLS-PEQQEM 569

  Fly   755 LQKFTTVSKATSAGAGLN 772
            ||.|:|.|       |:|
Mouse   570 LQAFSTQS-------GMN 580

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ssp2NP_001287065.1 PHA03247 <676..965 CDD:223021 29/108 (27%)
Nxf1NP_058093.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..113 5/18 (28%)
Interaction with ALYREF/THOC4 and LUZP4. /evidence=ECO:0000250|UniProtKB:Q9UBU9 2..197 23/124 (19%)
RNA-binding (RBD). /evidence=ECO:0000250 2..117 7/22 (32%)
Minor non-specific RNA-binding. /evidence=ECO:0000250 2..59
Major non-specific RNA-binding. /evidence=ECO:0000250 60..117 7/22 (32%)
RNA binding. /evidence=ECO:0000250 60..117 7/22 (32%)
Nuclear localization signal. /evidence=ECO:0000250 66..99 2/4 (50%)
Nuclear export signal. /evidence=ECO:0000250 82..109 4/14 (29%)
Tap-RNA_bind 115..197 CDD:286271 16/103 (16%)
leucine-rich repeat 223..265 CDD:275382 8/41 (20%)
LRR_8 264..326 CDD:290566 11/61 (18%)
LRR 1 265..290 1/24 (4%)
leucine-rich repeat 266..291 CDD:275382 1/24 (4%)
LRR_4 290..328 CDD:289563 10/37 (27%)
LRR 2 291..314 9/22 (41%)
leucine-rich repeat 292..315 CDD:275382 9/22 (41%)
LRR 3 315..342 2/26 (8%)
leucine-rich repeat 316..346 CDD:275382 4/29 (14%)
LRR 4 343..370 3/26 (12%)
NTF2 381..537 CDD:238403 33/205 (16%)
TAP_C 555..617 CDD:197882 13/36 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3763
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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