DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ssp2 and sbr

DIOPT Version :10

Sequence 1:NP_648672.1 Gene:ssp2 / 39540 FlyBaseID:FBgn0036389 Length:982 Species:Drosophila melanogaster
Sequence 2:NP_524660.1 Gene:sbr / 43944 FlyBaseID:FBgn0003321 Length:672 Species:Drosophila melanogaster


Alignment Length:511 Identity:104/511 - (20%)
Similarity:180/511 - (35%) Gaps:140/511 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   367 NNNNKAGYTPTLKGRGDMNLSPIVGATPQKPTGTAPGRLNNTFEPVAKTAPFNGEKFVLDTMELL 431
            |.:...||....:.|..:.|..|..|..:|...|...|.|      .:|...:..:|..|..  |
  Fly   173 NGHLPDGYRLMPRVRSGIPLVAIDDAFKEKMKVTMAKRYN------IQTKALDLSRFHADPD--L 229

  Fly   432 EQIEQPLDGTYNLQMSEQHRQMQC--VMDLAEAEV------EMLAQQGDEEQFENM--------- 479
            :|:..||   :...:......:.|  :.||....:      .|.|.:|.|::..|:         
  Fly   230 KQVFCPL---FRQNVMGAAIDIMCDNIPDLEALNLNDNSISSMEAFKGVEKRLPNLKILYLGDNK 291

  Fly   480 ---LAELGKVNTLNEEQLKM------------QKSLDTIKRRFHR-DEAEAEEREEELQQSAAEK 528
               ||.|..:..|:..:|.:            |:.:..::|:|.: .:.:.|..|.::....:|:
  Fly   292 IPSLAHLVVLRNLSILELVLKNNPCRSRYKDSQQFISEVRRKFPKLVKLDGETLEPQITFDLSEQ 356

  Fly   529 VDTPVLNQSHSSSNSSGGGGE---RLLSRRSRLYDDVN----LSAMHGSNGSSTSTNSA------ 580
               ..|.::.:|......|.|   :.|.:..|::|..|    |.|.|.....|.|..||      
  Fly   357 ---GRLLETKASYLCDVAGAEVVRQFLDQYFRIFDSGNRQALLDAYHEKAMLSISMPSASQAGRL 418

  Fly   581 -SFIVQRRDMPQVEQPAPDPD----------PEPAEEPPKSQVTAEIDPASYKLPERRERDRDRF 634
             ||....|::.::.....:..          ....:|.||:|                 .||..|
  Fly   419 NSFWKFNRNLRRLLNGEENRTRNLKYGRLACVSTLDEWPKTQ-----------------HDRRTF 466

  Fly   635 K---TIKISKEMRLQPEIIVPCIDDE---PQQLEDEQKQLVEDVRY------EEDQRQGSPPGRL 687
            .   ||..:..|......:...::||   |..:|      :.|||:      ...|..|     .
  Fly   467 TVDLTIYNTSMMVFTVTGLFKELNDETNNPASME------LYDVRHFARTYVVVPQNNG-----F 520

  Fly   688 SRRDQTTAISNNADASASNYLTYKKPKEKSLIQRRPQQQEAPLLAEPAPASTLPQPRSLSRPRYI 752
            ..|::|..|:|         .|:::.:|    .:|.|.|.|| .|.|:.:|.:..|::.:    .
  Fly   521 CIRNETIFITN---------ATHEQVRE----FKRSQHQPAP-GAMPSTSSAVTSPQAGA----A 567

  Fly   753 SGLQ-KFTTVSKATSAGAGLNATP----------AAAMPTTVTVPANGNGELKSPM 797
            :||| :...:..||...|.|:..|          :||:.||...|...:...|..|
  Fly   568 AGLQGRLNALGVATGPVAILSGDPLAATAPVNSGSAAISTTAVAPGAQDESTKMQM 623

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ssp2NP_648672.1 PHA03247 <676..965 CDD:223021 32/133 (24%)
sbrNP_524660.1 Tap-RNA_bind 113..191 CDD:462696 4/17 (24%)
leucine-rich repeat 215..255 CDD:275382 8/44 (18%)
LRR <252..>315 CDD:443914 12/62 (19%)
leucine-rich repeat 256..281 CDD:275382 5/24 (21%)
leucine-rich repeat 282..305 CDD:275382 3/22 (14%)
leucine-rich repeat 306..336 CDD:275382 4/29 (14%)
NTF2 372..531 CDD:238403 38/186 (20%)
flgK <548..>613 CDD:235895 18/69 (26%)
TAP_C 609..671 CDD:197882 3/15 (20%)

Return to query results.
Submit another query.