DRSC/TRiP Functional Genomics Resources

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Protein Alignment ssp2 and Nxf7

DIOPT Version :10

Sequence 1:NP_648672.1 Gene:ssp2 / 39540 FlyBaseID:FBgn0036389 Length:982 Species:Drosophila melanogaster
Sequence 2:NP_570958.1 Gene:Nxf7 / 170722 MGIID:2159343 Length:620 Species:Mus musculus


Alignment Length:140 Identity:33/140 - (23%)
Similarity:46/140 - (32%) Gaps:61/140 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly   655 DDEPQQLEDEQKQLVEDVRYEEDQRQGS------PPGRLSRRDQT--------------TAISNN 699
            ||:|:|.|..|        :.||...||      |.||  :.|:|              |.:..:
Mouse   102 DDKPEQREAGQ--------FTEDGELGSWFKVTVPCGR--KYDKTQLMNSIHSLCSVPFTPVDFH 156

  Fly   700 AD-------------ASASNYLTYKKPKEKSLIQRRPQQQEAPLLAEP--APAST--------LP 741
            .|             |||...::||...|        ..|:.|:...|  ||.|.        :.
Mouse   157 CDKHRIQFFVPDFRIASALKDISYKIHNE--------YFQKIPIFVNPSVAPYSVQNRFTKEEME 213

  Fly   742 QPRSLSRPRY 751
            |.:...|.||
Mouse   214 QLKLAMRKRY 223

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ssp2NP_648672.1 PHA03247 <676..965 CDD:223021 27/119 (23%)
Nxf7NP_570958.1 Tap-RNA_bind 122..201 CDD:462696 17/88 (19%)
leucine-rich repeat 227..269 CDD:275382
LRR <266..>355 CDD:443914
leucine-rich repeat 270..295 CDD:275382
leucine-rich repeat 296..319 CDD:275382
leucine-rich repeat 320..350 CDD:275382
NTF2_like 393..539 CDD:471850
TAP_C 558..619 CDD:197882
Blue background indicates that the domain is not in the aligned region.

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