DRSC/TRiP Functional Genomics Resources

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Protein Alignment Meics and su(Hw)

DIOPT Version :10

Sequence 1:NP_524062.1 Gene:Meics / 39539 FlyBaseID:FBgn0025874 Length:583 Species:Drosophila melanogaster
Sequence 2:NP_524349.1 Gene:su(Hw) / 41740 FlyBaseID:FBgn0003567 Length:941 Species:Drosophila melanogaster


Alignment Length:628 Identity:149/628 - (23%)
Similarity:227/628 - (36%) Gaps:164/628 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 VDLFSKEISDPPIWE---MLNSILPEICRVKRDEMPQKICPTCLVAAQNAFHFRHKCEQSFQFFS 93
            :.:.::||...|..|   ...|..|....||  .:.:|..|:..|.|......:....:..:...
  Fly    71 IKILNEEILGTPKTEKRGATKSTAPAASTVK--ILNEKKTPSATVTAVETTKIKTSPSKRKKMEH 133

  Fly    94 QLLQLDKSNSNLSRSHCRRGTMNPLIPFEIVGCEDPLDTNVTKLDANRPDVKTDIDEPTDGKA-- 156
            .:||..||.:..:                     |...|.||:.|.....:..|.:|...|:.  
  Fly   134 YVLQAVKSENTKA---------------------DTTVTVVTEEDDTIDFILADDEEVVPGRIEN 177

  Fly   157 TNGQESEPLQEVFEITMNDIKTEDEVSI-QETFEDAFDEENDNNNTDSEREDSDQWTVGS----- 215
            .||||.             :.|||:..: ::..||..|.....|::.::.::..:...|.     
  Fly   178 NNGQEI-------------VVTEDDEDLGEDGDEDGEDSSGKGNSSQTKIKEIVEHVCGKCYKTF 229

  Fly   216 -------------------------------------------------TEDQDEPWIPGGGGRQ 231
                                                             :|..|         ..
  Fly   230 RRVQSLKKHLEFCRYDSGYHLRKADMLKNLEKIEKDAVVMEKKDICFCCSESYD---------TF 285

  Fly   232 TVGGNNQSLLCTECGVSYSTQKALARHV-AKHKEQGDTQKPHLCDFCGRGFRTNAQLTTHRRRHT 295
            .:|..|    |.:|..|:.||.:..||: ..|.|..|..    |..|....|:.|.|..|..:|.
  Fly   286 HLGHIN----CPDCPKSFKTQTSYERHIFITHSEFSDFP----CSICNANLRSEALLALHEEQHK 342

  Fly   296 GE-RPFKCPLCPKAYTHGPTLKSHMH----THDEEKGHKCPQCDKTFYTRGNLRAHIQRHTGERP 355
            .. :|:.|.:|.|.:|....||.|..    :.:|.....|..||:.||...|||:|:::|.|.:.
  Fly   343 SRGKPYACKICGKDFTRSYHLKRHQKYSSCSSNETDTMSCKVCDRVFYRLDNLRSHLKQHLGTQV 407

  Fly   356 YKCPDCPQTFAKNSGLKLHSRLHKEERPFKCELCGKGFVQNQHLITHLRVHNGDRQFKCPDCDKS 420
            .|.|:                       :.|..|...|.....|..|:|.|.|::.|.|..|||.
  Fly   408 VKKPE-----------------------YMCHTCKNCFYSLSTLNIHIRTHTGEKPFDCDLCDKK 449

  Fly   421 FFEKSNMMKHQRTHSGIKPFKCEECGQAFSHNHHLKSHLRIHTGEKPYKCDQCGKGFSANQSLMK 485
            |.....:.||:|.|:|.||:.|..|.|||:....|..|::.||||:|:|||:|||.|.....|..
  Fly   450 FSALVALKKHRRYHTGEKPYSCTVCNQAFAVKEVLNRHMKRHTGERPHKCDECGKSFIQATQLRT 514

  Fly   486 HTLWHVDNNDRPFKCSQCPKAYDTQQSLRGHEKTHKNPDEPKTLHQCPHCDVRFALKKTLDKHIT 550
            |:..|:    |||.|.||.:.:.|::.|..|.|||.....|  :..|..|...|.....|.:|:.
  Fly   515 HSKTHI----RPFPCEQCDEKFKTEKQLERHVKTHSRTKRP--VFSCAECKRNFRTPALLKEHMD 573

  Fly   551 SHKIRPH----------------PCPQCPEGFFSQKSLKKHLR 577
            ..|..|.                .|..|.:.|.|..:|::|:|
  Fly   574 EGKHSPKQQRSSMRSAVKIMERTDCAICDKNFDSSDTLRRHIR 616

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MeicsNP_524062.1 zf-AD 20..95 CDD:462262 12/65 (18%)
C2H2 Zn finger 242..262 CDD:275368 7/20 (35%)
C2H2 Zn finger 274..294 CDD:275368 6/19 (32%)
SFP1 <296..374 CDD:227516 22/82 (27%)
COG5048 <299..486 CDD:227381 63/190 (33%)
C2H2 Zn finger 302..322 CDD:275368 7/23 (30%)
C2H2 Zn finger 330..350 CDD:275368 9/19 (47%)
C2H2 Zn finger 358..378 CDD:275368 1/19 (5%)
C2H2 Zn finger 386..406 CDD:275368 6/19 (32%)
COG5048 <395..583 CDD:227381 67/199 (34%)
C2H2 Zn finger 414..434 CDD:275368 8/19 (42%)
C2H2 Zn finger 442..462 CDD:275368 7/19 (37%)
C2H2 Zn finger 470..486 CDD:275368 7/15 (47%)
C2H2 Zn finger 500..520 CDD:275368 7/19 (37%)
C2H2 Zn finger 532..552 CDD:275370 5/19 (26%)
C2H2 Zn finger 559..579 CDD:275370 7/19 (37%)
su(Hw)NP_524349.1 C2H2 Zn finger 292..313 CDD:275368 7/20 (35%)
COG5048 <312..517 CDD:227381 74/231 (32%)
C2H2 Zn finger 321..341 CDD:275368 6/19 (32%)
C2H2 Zn finger 350..368 CDD:275368 7/17 (41%)
C2H2 Zn finger 382..402 CDD:275368 9/19 (47%)
C2H2 Zn finger 415..435 CDD:275368 6/19 (32%)
C2H2 Zn finger 443..463 CDD:275368 8/19 (42%)
COG5048 <467..620 CDD:227381 51/156 (33%)
C2H2 Zn finger 471..491 CDD:275368 7/19 (37%)
C2H2 Zn finger 499..519 CDD:275368 8/19 (42%)
C2H2 Zn finger 525..545 CDD:275368 7/19 (37%)
C2H2 Zn finger 555..572 CDD:275368 4/16 (25%)
C2H2 Zn finger 598..615 CDD:275371 5/16 (31%)

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