DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Meics and Neu2

DIOPT Version :10

Sequence 1:NP_524062.1 Gene:Meics / 39539 FlyBaseID:FBgn0025874 Length:583 Species:Drosophila melanogaster
Sequence 2:NP_649316.1 Gene:Neu2 / 40375 FlyBaseID:FBgn0037085 Length:382 Species:Drosophila melanogaster


Alignment Length:462 Identity:122/462 - (26%)
Similarity:182/462 - (39%) Gaps:117/462 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 KRDEMPQKICPTCLVAAQNAFHFRHKCEQSFQFFSQLLQLDKSNSNLSRSHCRRGTMNPLIPFEI 123
            |.|.:...||.:||..|||||......|:|.||:..|..:.:..|....|               
  Fly    29 KHDPLSNTICKSCLEDAQNAFDIIETYERSHQFYRFLKDVREEESENDGS--------------- 78

  Fly   124 VGCEDPLDTNVTKLDANRPDVKTDIDEPTDGKATNGQESEPLQEVFEITMNDIKTEDEVSIQETF 188
             ||.:       :::|...|::...|:...|       :||     :|...|||.:::       
  Fly    79 -GCSE-------EVEAAERDLQDGADDVDSG-------NEP-----DINECDIKAKEK------- 116

  Fly   189 EDAFDEENDNNNTDSEREDSDQWTVGSTEDQDEPWIPGGGGRQTVGGNNQSLLCTECGVSYSTQK 253
                                                ||             ..|:.|..|:..:.
  Fly   117 ------------------------------------PG-------------FSCSHCPKSFQVKS 132

  Fly   254 ALARHVAKHKEQGDTQKPHLCDFCGRGFRTNAQLTTHRRRHTGERPFKCPLCPKAYTHGPTLKSH 318
            .|..|:..|    ..::|..|..|.:.|..::.|..|.|.|||||||:|..||:::|.|..||:|
  Fly   133 NLKVHMRSH----TGERPFTCSLCPKSFGYSSGLQNHMRTHTGERPFQCSHCPRSFTAGHHLKAH 193

  Fly   319 MHTHDEEKGHKCPQCDKTFYTRGNLRAHIQRHTGERPYKCPDCPQTFAKNSGLKLHSRLHKEERP 383
            :..|:.....:||.|.|.|.|...|:.|:..||.|..:||..|.::|.....|.:|.|:| :||.
  Fly   194 IQMHERRGSLRCPYCQKCFLTSLILKQHLATHTDETQFKCSQCSKSFQVEHELWMHMRVH-QERL 257

  Fly   384 FKCELCGKGFVQNQHLITHLRVHNGDRQFKCPDCDKSFFEKSNMMKHQRTHSGIKPFKCEECGQA 448
            |.|..|.|.|..:.:|..||     .|..:|....|:...|:      ..||  |..||.:|.:.
  Fly   258 FTCGHCSKDFALHAYLKRHL-----SRNARCSQSSKASAHKT------LGHS--KALKCGKCPKT 309

  Fly   449 FSHNHHLKSHLRIHTGEKPYKCDQCGKGFSANQSLMKHTLWHVDNNDRPFKCSQCPKAYDTQQSL 513
            |:....|.:||:.||..||.....|....|...        |.:...:|||||.||:.:..:.:|
  Fly   310 FTDRSALSTHLKSHTKNKPLLEGPCKSSGSKPA--------HSNAQRKPFKCSSCPRTFSRKSAL 366

  Fly   514 RGHEKTH 520
            ..|.:||
  Fly   367 LTHLQTH 373

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MeicsNP_524062.1 zf-AD 20..95 CDD:462262 15/35 (43%)
C2H2 Zn finger 242..262 CDD:275368 5/19 (26%)
C2H2 Zn finger 274..294 CDD:275368 6/19 (32%)
SFP1 <296..374 CDD:227516 30/77 (39%)
COG5048 <299..486 CDD:227381 60/186 (32%)
C2H2 Zn finger 302..322 CDD:275368 8/19 (42%)
C2H2 Zn finger 330..350 CDD:275368 8/19 (42%)
C2H2 Zn finger 358..378 CDD:275368 6/19 (32%)
C2H2 Zn finger 386..406 CDD:275368 7/19 (37%)
COG5048 <395..583 CDD:227381 35/126 (28%)
C2H2 Zn finger 414..434 CDD:275368 3/19 (16%)
C2H2 Zn finger 442..462 CDD:275368 6/19 (32%)
C2H2 Zn finger 470..486 CDD:275368 2/15 (13%)
C2H2 Zn finger 500..520 CDD:275368 6/19 (32%)
C2H2 Zn finger 532..552 CDD:275370
C2H2 Zn finger 559..579 CDD:275370
Neu2NP_649316.1 zf-AD 1..63 CDD:462262 15/33 (45%)
COG5048 <119..241 CDD:227381 43/125 (34%)
C2H2 Zn finger 121..141 CDD:275368 5/19 (26%)
zf-H2C2_2 133..156 CDD:463886 6/26 (23%)
C2H2 Zn finger 149..169 CDD:275368 6/19 (32%)
zf-H2C2_2 162..185 CDD:463886 13/22 (59%)
C2H2 Zn finger 177..197 CDD:275368 8/19 (42%)
C2H2 Zn finger 205..225 CDD:275368 8/19 (42%)
zf-C2H2_8 206..286 CDD:464935 30/85 (35%)
C2H2 Zn finger 233..253 CDD:275368 6/19 (32%)
C2H2 Zn finger 260..297 CDD:275368 11/47 (23%)
C2H2 Zn finger 303..323 CDD:275368 6/19 (32%)
C2H2 Zn finger 353..373 CDD:275368 6/19 (32%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.