DRSC/TRiP Functional Genomics Resources

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Protein Alignment Meics and sfc2

DIOPT Version :9

Sequence 1:NP_524062.1 Gene:Meics / 39539 FlyBaseID:FBgn0025874 Length:583 Species:Drosophila melanogaster
Sequence 2:NP_594670.1 Gene:sfc2 / 2542887 PomBaseID:SPAC144.09c Length:374 Species:Schizosaccharomyces pombe


Alignment Length:362 Identity:94/362 - (25%)
Similarity:143/362 - (39%) Gaps:70/362 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   244 ECGVSYSTQKALARHVAKHKEQGDTQKPHLCDF--CGRGFRTNAQLTTHRRRHTGERPFKCPL-- 304
            |||..||....|.:|:..|    ..::|.:||:  |.:.|...:.|..|:|.||..:||.|..  
pombe    29 ECGKKYSRPSLLEQHLRTH----SNERPFVCDYTGCSKAFYRKSHLKIHKRCHTNVKPFSCHYDG 89

  Fly   305 CPKAYTHGPTLKSHMHTHDEEKGHKC--PQCDKTFYTRGNLRAHIQR-HTGERPYKC--PDCPQT 364
            |...:.....|:.|:..|.:.|.:.|  ..||:.|.....||:||.. ||...||.|  .||...
pombe    90 CDAQFYTQQHLERHIEVHRKPKPYACTWEGCDECFSKHQQLRSHISACHTHLLPYPCTYQDCELR 154

  Fly   365 FAKNSGLKLH-SRLH-----------------------------KEERPFKCELCGKGFVQNQHL 399
            ||....|:.| :|.|                             :|.....|.:||:.|....||
pombe   155 FATKQKLQNHVNRAHEKIISYSCPHESCVGHEGFEKWSQLQNHIREAHVPSCSICGRQFKTAAHL 219

  Fly   400 ITHLRVHNGD----RQFKCP--DCDKSFFEKSNMMKH-QRTHSGIKPFKCEECGQAFSHNHHLKS 457
            ..|:.:|...    :.:.||  .|.|||...|.:.|| ...|.|...|.|:.||..|.:.|.|:.
pombe   220 RHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKHISVIHEGNMAFHCDSCGTKFGYKHMLQR 284

  Fly   458 HLRIHTGEKPYK--CDQCGKGFSANQSLMKHTLWHVDNNDRPFK---CSQCPKAYDTQQSLRGHE 517
            ||...|.:|.:|  .::||......:.:..|     |..::...   .|...|....:.:..|::
pombe   285 HLERGTCKKAHKPYINECGIKHDGIEGVAIH-----DQKEKELSSNLVSDVAKKIINEVTGHGYK 344

  Fly   518 KTHKNPDEPKTLHQC--PHCDVRFALKKTLDKHITSH 552
            :..:        :.|  |.|:.||.....:.:|:.||
pombe   345 EARE--------YSCSFPECNYRFKRLYDMHRHLNSH 373

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MeicsNP_524062.1 zf-AD 21..95 CDD:285071
C2H2 Zn finger 242..262 CDD:275368 7/17 (41%)
C2H2 Zn finger 274..294 CDD:275368 7/21 (33%)
zf-H2C2_2 287..311 CDD:290200 9/25 (36%)
C2H2 Zn finger 302..322 CDD:275368 4/21 (19%)
C2H2 Zn finger 330..350 CDD:275368 8/22 (36%)
zf-H2C2_2 342..366 CDD:290200 11/26 (42%)
C2H2 Zn finger 358..378 CDD:275368 8/22 (36%)
C2H2 Zn finger 386..406 CDD:275368 7/19 (37%)
COG5048 <395..583 CDD:227381 42/172 (24%)
zf-C2H2 412..434 CDD:278523 9/24 (38%)
C2H2 Zn finger 414..434 CDD:275368 9/22 (41%)
zf-H2C2_2 426..451 CDD:290200 9/25 (36%)
C2H2 Zn finger 442..462 CDD:275368 8/19 (42%)
zf-H2C2_2 454..478 CDD:290200 8/25 (32%)
C2H2 Zn finger 470..486 CDD:275368 2/15 (13%)
C2H2 Zn finger 500..520 CDD:275368 3/19 (16%)
C2H2 Zn finger 532..552 CDD:275370 6/21 (29%)
C2H2 Zn finger 559..579 CDD:275370
sfc2NP_594670.1 COG5048 1..374 CDD:227381 94/362 (26%)
C2H2 Zn finger 28..47 CDD:275368 7/17 (41%)
C2H2 Zn finger 55..77 CDD:275368 7/21 (33%)
C2H2 Zn finger 85..107 CDD:275368 4/21 (19%)
C2H2 Zn finger 115..138 CDD:275368 8/22 (36%)
C2H2 Zn finger 146..165 CDD:275368 6/18 (33%)
C2H2 Zn finger 206..226 CDD:275368 7/19 (37%)
C2H2 Zn finger 238..261 CDD:275368 9/22 (41%)
C2H2 Zn finger 269..286 CDD:275368 6/16 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 138 1.000 Inparanoid score I1382
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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