DRSC/TRiP Functional Genomics Resources

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Protein Alignment Meics and hinf-1

DIOPT Version :9

Sequence 1:NP_524062.1 Gene:Meics / 39539 FlyBaseID:FBgn0025874 Length:583 Species:Drosophila melanogaster
Sequence 2:NP_493579.2 Gene:hinf-1 / 173348 WormBaseID:WBGene00009553 Length:541 Species:Caenorhabditis elegans


Alignment Length:554 Identity:117/554 - (21%)
Similarity:181/554 - (32%) Gaps:188/554 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 DLFSKEISDPPIWEMLNSILPEICRVKRDEMPQKICPTCL----VAAQNAFHFRHKCEQSFQFFS 93
            |..|.|:|:    |::|..||.....:..:.||.....||    |::.::     |.|.....|.
 Worm   107 DSESGELSE----EVMNHWLPMTWCERSSDDPQVFTFVCLWGQCVSSSSS-----KDEFVDHLFG 162

  Fly    94 QLLQLDKSNSNLSRSHCRRGTMNPLIPFEIVGCEDPLDT----------NVTKLDANRPDVKTDI 148
            .:..:::...|        |.....:..::.||...||:          :|.:.|..:       
 Worm   163 HVSVIEEGVQN--------GNHMNTVQCKVRGCNKHLDSIFQLHRHVSMHVFQADCQQ------- 212

  Fly   149 DEPTDGKATNGQESEPLQEVFEITMNDIKTEDEVSIQET-FEDAFDEENDNNNTDSEREDSDQWT 212
                       :.||.|          |:.||.:.|:.. ||...:...:....:.:.||     
 Worm   213 -----------KGSEAL----------IEKEDYIGIESCGFEPCTNINYEGMLLNCQWED----- 251

  Fly   213 VGSTEDQDEPWIPGGGGRQTVGGNNQSLLCTECGVSYSTQKALARHVAKHKE------------- 264
                                            ||:.:::...|..||..|.:             
 Worm   252 --------------------------------CGMPFNSLTELFDHVGHHIDGVGDVDRIQQNFS 284

  Fly   265 QGDTQKPHLCDF--CGRGFRTNAQLTTHRRRHTGERPFKCPLCPKAYTHGPTLKSH-------MH 320
            .||.:....|.:  |.:...:.|.|..|.|.|:||:...||.|.:.::....|..|       |.
 Worm   285 NGDKKVVFPCKWTACTQVADSKANLRRHARHHSGEKVLACPFCARFFSRRDKLYDHCLRRTILMK 349

  Fly   321 THDEEKGHKCPQCDKTFYTRGNLRAHIQRHTGERPYKCPDCPQTFAKNSGLKLHSRLHKEERPFK 385
            ..:.|..:.|..|.|.|.|...|..|:.||...  ..||.|      :.||...:.||:      
 Worm   350 NPEMEDPYLCKLCQKRFGTEKALCMHVTRHLVS--LTCPLC------SLGLGCRAELHR------ 400

  Fly   386 CELCGKGFVQNQHLIT-HLRVHNGDRQFKCPDCDKSFFEKSNMMKHQRTHSGIKPFKCEECGQAF 449
                        ||:| |.|   ..:.|||..|.|.||.:|.:.:|...||.:.           
 Worm   401 ------------HLMTKHSR---RSKDFKCDTCSKLFFTESELNRHAVYHSDVM----------- 439

  Fly   450 SHNHHLKSHLRIHTGEKPYKCDQCGKGFSANQSLMKHTLWHVDN-NDRPFKCSQCPKAYDTQQSL 513
                              |.|..|.:.|...:.||||...|.:| |..|:.|..|.:.|.|..:|
 Worm   440 ------------------YSCKHCPEKFKWKKQLMKHMKEHDENFNPSPYTCHLCDRTYTTGFAL 486

  Fly   514 RGH-EKTHKNPDEPKTLHQCPHCDVRFALKKTLD 546
            ..| .:.|:        .|.|:...||..||..|
 Worm   487 GRHLTRQHR--------LQIPYGFSRFTYKKCAD 512

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MeicsNP_524062.1 zf-AD 21..95 CDD:285071 16/65 (25%)
C2H2 Zn finger 242..262 CDD:275368 5/19 (26%)
C2H2 Zn finger 274..294 CDD:275368 6/21 (29%)
zf-H2C2_2 287..311 CDD:290200 9/23 (39%)
C2H2 Zn finger 302..322 CDD:275368 6/26 (23%)
C2H2 Zn finger 330..350 CDD:275368 7/19 (37%)
zf-H2C2_2 342..366 CDD:290200 7/23 (30%)
C2H2 Zn finger 358..378 CDD:275368 5/19 (26%)
C2H2 Zn finger 386..406 CDD:275368 5/20 (25%)
COG5048 <395..583 CDD:227381 42/155 (27%)
zf-C2H2 412..434 CDD:278523 9/21 (43%)
C2H2 Zn finger 414..434 CDD:275368 7/19 (37%)
zf-H2C2_2 426..451 CDD:290200 3/24 (13%)
C2H2 Zn finger 442..462 CDD:275368 0/19 (0%)
zf-H2C2_2 454..478 CDD:290200 3/23 (13%)
C2H2 Zn finger 470..486 CDD:275368 5/15 (33%)
C2H2 Zn finger 500..520 CDD:275368 6/20 (30%)
C2H2 Zn finger 532..552 CDD:275370 6/15 (40%)
C2H2 Zn finger 559..579 CDD:275370
hinf-1NP_493579.2 C2H2 Zn finger 299..316 CDD:275368 5/16 (31%)
C2H2 Zn finger 324..344 CDD:275368 5/19 (26%)
C2H2 Zn finger 359..379 CDD:275368 7/19 (37%)
C2H2 Zn finger 385..406 CDD:275368 10/44 (23%)
C2H2 Zn finger 415..435 CDD:275368 7/19 (37%)
C2H2 Zn finger 442..462 CDD:275368 7/19 (37%)
C2H2 Zn finger 473..494 CDD:275368 6/20 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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