DRSC/TRiP Functional Genomics Resources

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Protein Alignment Meics and znf1079

DIOPT Version :9

Sequence 1:NP_524062.1 Gene:Meics / 39539 FlyBaseID:FBgn0025874 Length:583 Species:Drosophila melanogaster
Sequence 2:XP_005159263.2 Gene:znf1079 / 100333893 ZFINID:ZDB-GENE-110913-68 Length:332 Species:Danio rerio


Alignment Length:348 Identity:125/348 - (35%)
Similarity:169/348 - (48%) Gaps:54/348 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   253 KALARHVAKHKEQGDTQKPHL----------------CDF----CGRGFRTNAQLTTHRRRHTGE 297
            |...:...||:|....:||.|                |:|    ||..|.....|..|.|.||||
Zfish    12 KTEEKQFEKHQETTTDEKPTLTEKTSSCGGPWKSKSACNFTCLQCGNCFTRKHNLQVHMRVHTGE 76

  Fly   298 RPFKCPLCPKAYTHGPTLKSHMHTHDEEKGHKCPQCDKTFYTRGNLRAHIQRHTGERPYKCPDCP 362
            :|:.||.|.|::.....||.||.||..|:.:.|.||.:.|||.||...|::.|||||||.|..|.
Zfish    77 KPYSCPQCGKSFKQNGYLKVHMRTHTGERCYTCQQCGQRFYTTGNFAQHMRIHTGERPYTCLQCG 141

  Fly   363 QTFAKNSGLKLHSRLHKEERPFKCELCGKGFVQNQHLITHLRVHNGDRQFKCPDCDKSFFEKSNM 427
            ::..:::.|..|.|:|..|:|:.|..|||.|.||..|..|:|.||..|.|.|..|.|||.:|.::
Zfish   142 KSLYQSANLAAHMRIHTVEKPYSCIQCGKSFKQNSTLEAHIRAHNDGRIFSCQQCGKSFAQKQDL 206

  Fly   428 MKHQRTHSGIKPFKCEECGQAFSHNHHLKSHLRIHTGEKPYKCDQCGKGFSANQSLMKHTLWHVD 492
            ..|.|.|||.||:.|.|||::|.....||.|:..||.|||:.|.|||:.|:...|||.|  .:|.
Zfish   207 EIHMRIHSGKKPYTCTECGKSFRFKSTLKQHMISHTREKPFTCAQCGRSFTTKSSLMNH--MNVH 269

  Fly   493 NNDRPFKCSQCPKAYDTQQSLRGHEKTHKNPDEPKTLHQCPHCDVRFALKKTLDKHITSHKIRPH 557
            .....|.|.||.|:...:.|::.|.||                                |.:...
Zfish   270 TGTIVFTCDQCGKSLTRKDSIKNHMKT--------------------------------HSVERF 302

  Fly   558 PCPQCPEGFFSQKSLKKHLRLHN 580
            .|.:|.:.|.|::||..|::|||
Zfish   303 SCCECGKSFKSERSLNTHMKLHN 325

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MeicsNP_524062.1 zf-AD 21..95 CDD:285071
C2H2 Zn finger 242..262 CDD:275368 1/8 (13%)
C2H2 Zn finger 274..294 CDD:275368 8/23 (35%)
zf-H2C2_2 287..311 CDD:290200 12/23 (52%)
C2H2 Zn finger 302..322 CDD:275368 8/19 (42%)
C2H2 Zn finger 330..350 CDD:275368 9/19 (47%)
zf-H2C2_2 342..366 CDD:290200 11/23 (48%)
C2H2 Zn finger 358..378 CDD:275368 5/19 (26%)
C2H2 Zn finger 386..406 CDD:275368 10/19 (53%)
COG5048 <395..583 CDD:227381 65/186 (35%)
zf-C2H2 412..434 CDD:278523 9/21 (43%)
C2H2 Zn finger 414..434 CDD:275368 8/19 (42%)
zf-H2C2_2 426..451 CDD:290200 12/24 (50%)
C2H2 Zn finger 442..462 CDD:275368 8/19 (42%)
zf-H2C2_2 454..478 CDD:290200 12/23 (52%)
C2H2 Zn finger 470..486 CDD:275368 8/15 (53%)
C2H2 Zn finger 500..520 CDD:275368 7/19 (37%)
C2H2 Zn finger 532..552 CDD:275370 0/19 (0%)
C2H2 Zn finger 559..579 CDD:275370 7/19 (37%)
znf1079XP_005159263.2 C2H2 Zn finger 53..73 CDD:275368 6/19 (32%)
zf-H2C2_2 65..90 CDD:290200 12/24 (50%)
C2H2 Zn finger 81..101 CDD:275368 8/19 (42%)
C2H2 Zn finger 109..129 CDD:275368 9/19 (47%)
C2H2 Zn finger 137..157 CDD:275368 5/19 (26%)
zf-H2C2_2 149..174 CDD:290200 11/24 (46%)
COG5048 <161..320 CDD:227381 67/192 (35%)
C2H2 Zn finger 165..185 CDD:275368 10/19 (53%)
C2H2 Zn finger 193..213 CDD:275368 8/19 (42%)
zf-H2C2_2 205..228 CDD:290200 11/22 (50%)
C2H2 Zn finger 221..241 CDD:275368 8/19 (42%)
zf-H2C2_2 234..258 CDD:290200 13/23 (57%)
C2H2 Zn finger 249..269 CDD:275368 9/21 (43%)
zf-C2H2_2 252..>322 CDD:289522 25/103 (24%)
C2H2 Zn finger 277..297 CDD:275368 8/51 (16%)
C2H2 Zn finger 304..324 CDD:275368 7/19 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100488
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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