DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Meics and Zfp1004

DIOPT Version :10

Sequence 1:NP_524062.1 Gene:Meics / 39539 FlyBaseID:FBgn0025874 Length:583 Species:Drosophila melanogaster
Sequence 2:NP_001139335.1 Gene:Zfp1004 / 100271882 MGIID:3836251 Length:495 Species:Mus musculus


Alignment Length:371 Identity:131/371 - (35%)
Similarity:197/371 - (53%) Gaps:39/371 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   242 CTECGVSYSTQKALARHVAKHKEQGDTQKPHLCDFCGRGFRTNAQLTTHRRRHTGERPFKCPLCP 306
            |.:||.|::.:.    |:.:||.....:||..|..||:....|..|..|::.||||:|::|..|.
Mouse   105 CNQCGKSFARKS----HLLRHKRTHTGEKPFQCYQCGKTLARNTHLLQHKKVHTGEKPYECKHCD 165

  Fly   307 KA-----------YTH-----------GPTLKSH------MHTHDEEKGHKCPQCDKTFYTRGNL 343
            ||           .||           |.::..|      ...|..||..:|.||.|:|..:.||
Mouse   166 KASVCHIGLLYHKRTHAGQRPYEWNECGKSIVYHSCIKQCKRRHTGEKPFECNQCGKSFARKSNL 230

  Fly   344 RAHIQRHTGERPYKCPDCPQTFAKNSGLKLHSRLHKEERPFKCELCGKGFVQNQHLITHLRVHNG 408
            ..|.:.||||:||||..|.:.||..|.||.|.|:|..|.|::|:.|||.|.:...|.||.|.|.|
Mouse   231 LRHKRIHTGEKPYKCDQCGKDFASPSSLKCHKRVHTGENPYECKQCGKAFARLSILRTHKRTHTG 295

  Fly   409 DRQFKCPDCDKSFFEKSNMMKHQRTHSGIKPFKCEECGQAFSHNHHLKSHLRIHTGEKPYKCDQC 473
            ::.|:|.:|.|||..||::::|:|.|:|.||:||::||:..:..:.|:.|.|:|||||.|:|.||
Mouse   296 EKPFECNECGKSFARKSHLLRHKRIHTGEKPYKCDQCGKDLACPNSLQYHKRVHTGEKSYECKQC 360

  Fly   474 GKGFSANQSLMKHTLWHVDNNDRPFKCSQCPKAYDTQQSLRGHEKTHKNPDEPKTLHQCPHCDVR 538
            ||.|:.:.||..|...|  ..::|::|:||.||:.:......|::||.. :.|   ::|..|...
Mouse   361 GKAFAFSTSLRIHKRTH--TGEKPYECNQCGKAFSSPSGFLYHKQTHTG-ERP---YECNECGKS 419

  Fly   539 FALKKTLDKHITSHK-IRPHPCPQCPEGFFSQKSLKKHLRLHNLKK 583
            |..:.....|..:|. .:|..|.||.:.|.....|.:|.|:|..:|
Mouse   420 FIHRSNFQMHKRTHTGEKPFECDQCGKSFAQNTYLLQHKRVHTGEK 465

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MeicsNP_524062.1 zf-AD 20..95 CDD:462262
C2H2 Zn finger 242..262 CDD:275368 5/19 (26%)
C2H2 Zn finger 274..294 CDD:275368 6/19 (32%)
SFP1 <296..374 CDD:227516 36/105 (34%)
COG5048 <299..486 CDD:227381 85/214 (40%)
C2H2 Zn finger 302..322 CDD:275368 8/47 (17%)
C2H2 Zn finger 330..350 CDD:275368 8/19 (42%)
C2H2 Zn finger 358..378 CDD:275368 9/19 (47%)
C2H2 Zn finger 386..406 CDD:275368 9/19 (47%)
COG5048 <395..583 CDD:227381 67/188 (36%)
C2H2 Zn finger 414..434 CDD:275368 9/19 (47%)
C2H2 Zn finger 442..462 CDD:275368 6/19 (32%)
C2H2 Zn finger 470..486 CDD:275368 8/15 (53%)
C2H2 Zn finger 500..520 CDD:275368 6/19 (32%)
C2H2 Zn finger 532..552 CDD:275370 4/19 (21%)
C2H2 Zn finger 559..579 CDD:275370 7/19 (37%)
Zfp1004NP_001139335.1 KRAB 4..44 CDD:460171
C2H2 Zn finger 79..97 CDD:275368
COG5048 99..453 CDD:227381 126/357 (35%)
C2H2 Zn finger 105..125 CDD:275368 7/23 (30%)
C2H2 Zn finger 133..153 CDD:275368 6/19 (32%)
C2H2 Zn finger 161..181 CDD:275368 4/19 (21%)
C2H2 Zn finger 190..209 CDD:275368 2/18 (11%)
C2H2 Zn finger 217..237 CDD:275368 8/19 (42%)
C2H2 Zn finger 245..265 CDD:275368 9/19 (47%)
C2H2 Zn finger 273..293 CDD:275368 9/19 (47%)
C2H2 Zn finger 301..321 CDD:275368 9/19 (47%)
C2H2 Zn finger 329..349 CDD:275368 6/19 (32%)
C2H2 Zn finger 357..377 CDD:275368 9/19 (47%)
C2H2 Zn finger 385..405 CDD:275368 6/19 (32%)
C2H2 Zn finger 413..433 CDD:275368 4/19 (21%)
C2H2 Zn finger 441..461 CDD:275368 7/19 (37%)
zf-H2C2_2 453..478 CDD:463886 5/13 (38%)
C2H2 Zn finger 469..489 CDD:275368
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.