DRSC/TRiP Functional Genomics Resources

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Protein Alignment DCTN1-p150 and Clip4

DIOPT Version :10

Sequence 1:NP_524061.1 Gene:DCTN1-p150 / 39536 FlyBaseID:FBgn0001108 Length:1265 Species:Drosophila melanogaster
Sequence 2:NP_001415539.1 Gene:Clip4 / 298801 RGDID:1311049 Length:717 Species:Rattus norvegicus


Alignment Length:353 Identity:86/353 - (24%)
Similarity:135/353 - (38%) Gaps:98/353 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 LKVGARVELTGKDLLGTVAYVGMTSFAVGKWVGVVLDEPKGKNSGSIKGQQYFQCDENCGMFVRP 70
            ||:|.||.:.|:. :||:.:.|.|.||.|:|.|:.||||:|||:||:...|||:|....|:|...
  Rat   283 LKLGDRVVIAGQK-VGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYFKCAPKYGIFAPL 346

  Fly    71 TQL-------RLLEAAPGSRRSIEDVSGATPTAAQPTKAR---LSSSRTSLSSSRQSLLGSRTQL 125
            :::       :.:...|.::.::...|.....|...:|..   ::|.:.:.|.|..||..|....
  Rat   347 SKITKVKDGRKNITHTPSTKATLHARSQKVDVAHVTSKVNSGLMTSKKENASESTLSLPRSEELK 411

  Fly   126 TTSLSERT--------ASSSSIGPR----KSLAPQNSKDK----ESPSTSLAEGAPAASGGNGAA 174
            |.:.::.|        :|:||:..:    |.|:..:|..|    :|||......|...|....||
  Rat   412 TVAKNDATQPGCISSSSSTSSLDHKQSHPKKLSTSSSSGKKTLSKSPSLPSRASAGLKSSTTSAA 476

  Fly   175 SHASSKRA------------------SFVETGF-------LEILKP-----------QFTPSQPL 203
            ::...:.|                  .|..|.|       :|:.||           |:....| 
  Rat   477 NNTHREGALRLGERVLVVGQRVGTIKFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSP- 540

  Fly   204 RSPSFTMPSNSGAEDKVALLEAQKTSAELQAQLADLTEKLETLKQRRNEDKERLREFDKMKIQFE 268
            |...|..||                      ::..|::.|:||.           |....| |..
  Rat   541 RYGIFAPPS----------------------RVQRLSDSLDTLS-----------EISSNK-QNH 571

  Fly   269 QLQEFRTKIMGAQASLQKELLRAKQEAK 296
            ....||.......||.|||:.|....||
  Rat   572 SYPGFRRSFSTTSASSQKEINRRNAFAK 599

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DCTN1-p150NP_524061.1 CAP_GLY 8..73 CDD:460154 28/64 (44%)
NIP100 13..>272 CDD:227569 71/320 (22%)
SMC_prok_B <219..>497 CDD:274008 17/78 (22%)
Dynactin 550..834 CDD:463591
Smc <965..>1080 CDD:440809
Clip4NP_001415539.1 ANK 1 65..101
ANK 2 149..180
ANK 3 186..215
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 387..482 22/94 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 565..599 10/34 (29%)
Blue background indicates that the domain is not in the aligned region.

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