DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment DCTN1-p150 and clip1b

DIOPT Version :9

Sequence 1:NP_524061.1 Gene:DCTN1-p150 / 39536 FlyBaseID:FBgn0001108 Length:1265 Species:Drosophila melanogaster
Sequence 2:XP_021335153.1 Gene:clip1b / 100537790 ZFINID:ZDB-GENE-111111-7 Length:862 Species:Danio rerio


Alignment Length:798 Identity:188/798 - (23%)
Similarity:337/798 - (42%) Gaps:192/798 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 NLKVGARVELTGKDLLGTVAYVGMTSFAVGKWVGVVLDEPKGKNSGSIKGQQYFQCDENCGMFVR 69
            :..||.||.:.| :..|.|.:||.|.||.|:|.|:|||||.|||.||:.|.:||||.:..|:|.|
Zfish    47 DFSVGERVWVNG-NKPGLVQFVGGTQFAPGQWAGIVLDEPIGKNDGSVSGVRYFQCKDLYGIFTR 110

  Fly    70 PTQLR---LLEAAP-GSRRSIEDVSGAT--PTAAQPT---KARLSSSRTSLSSSRQSLL------ 119
            |::|.   :.|..| |::...:..||..  |.||..|   ..|.||:.|..:|...|.|      
Zfish   111 PSKLTRSPVQEREPNGTQTPADKTSGPVKEPAAAPQTTTVNTRNSSNLTRTASESASNLSETDSA 175

  Fly   120 ----------------GSRTQLTTSLSERTASSSS---------IG---------------PRKS 144
                            ||:..:...|.|...:...         :|               |:..
Zfish   176 KKIQRELKLGDRVLVGGSKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGGRYFQCLPKYG 240

  Fly   145 L-APQN------------SKDKESPSTSLAEGAPAASGGNGAASHASSKRASFVETGFLEILKPQ 196
            | ||.:            :|.|.|...|..:.:|:||..:..:|..||........|.|.....:
Zfish   241 LFAPTHKVTRIGFPSTTPAKSKASRRRSTLKNSPSASSVSSLSSVTSSVGGKPSRAGLLTETSVR 305

  Fly   197 FTPSQPLRSPSFTMPSNSGAEDKVALLE-------------AQKTS--AELQAQLADLTEKLETL 246
            :.     |..|.|.......::|...:|             |:.||  .|:|.:||.||:..|..
Zfish   306 YA-----RKISGTTALQEALKEKQQHIEQLLAERDLERTEVARATSHAGEVQQELALLTQAQEQY 365

  Fly   247 KQRRNEDKERLREF----DKMKIQ-FEQLQEFRTKIMGAQASLQKELLRAKQEAKDAIEAKEQHA 306
            ........::||..    |:.|:: ..||:|.:.|:...|..:::..: .|.:.:...:.:..|.
Zfish   366 AVEMEAKLDQLRRLVETADRDKVELMNQLEEEKRKVEDLQFRVEEACI-TKGDLETQTKLEHAHI 429

  Fly   307 QEMADLADNVEMITLDKEMAEEKADTLQLELE-------SSKERIEELEVDLELLRSEMQN-KAE 363
            :|:.      :.:..:|    .|||.||.|||       |.:.||.|||.::..|..:::. :||
Zfish   430 KELE------QSLLFEK----TKADKLQRELEDTRVATVSERSRIMELEKEVSDLHLQLRTLRAE 484

  Fly   364 SAIGNISGGGDSPGLSTYEFKQLEQQ-NIRLKETLVRLRDLSAHDK---------HDIQKLSKEL 418
            ::      |..||.|...:.|:|..: ..|.||.:...:.|||.::         ||:::..:..
Zfish   485 TS------GSASPPLQDKKIKELNSELETRQKELIFLQQKLSASEEQKTSVQQQLHDLKQQFEAA 543

  Fly   419 EMKRSEVT-ELERTKEKLSAKIDELEAIVADLQEQVDAA-LGAEEMVEQLAEKKMELEDKVKLLE 481
            |..|::.| .::..:.||..:.::||.:..:.:::.:.. ...:|.::...::..||:::::||:
Zfish   544 EEDRNKATLAMQEMEMKLQTERNQLEDLRREQKKEEERKHTQNDEKLKLTTQRNEELQEQLELLK 608

  Fly   482 EEIAQL-EALEEVHEQLVESNHELELD--------------LREELD---------LANGAKKEV 522
            ::..|: :.|....|:|.:...||:|:              |.|:||         |.:...||:
Zfish   609 QQNTQIQDQLSSETERLRQQIEELKLNAVQRQASLQEEQGTLTEQLDITVRENSNALMSDKDKEL 673

  Fly   523 ---------LRERDAAIETI--------YDRDQTIVKFRELVQKLNDQLTELRDRNSSNEKESLQ 570
                     ||..:|..:|:        .|:.:.:.:.:.|.|||     ||| ...|.::.|.:
Zfish   674 EMLRNEIAALRGENAMTKTLKSAVTSLEEDKAELLERVKSLEQKL-----ELR-HTHSGQQSSTE 732

  Fly   571 DPSLKMVTETIDYKQMFAESKA-YTRAIDVQLRQIELSQANEHVQMLTAFMPESFMSRGGDHDSI 634
            |.:::.:.|    ::.|||.:. :..::.|     :|.:.||.:::....|..:..:...|:|.:
Zfish   733 DTTVEQLRE----EKEFAEGQINFLNSVIV-----DLQRKNEELKVKLKKMALTEFNGNEDNDGL 788

  Fly   635 LVILLISRI---VFKCDI 649
            :.:....:.   || |||
Zfish   789 VEVKKKKKAPPRVF-CDI 805

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DCTN1-p150NP_524061.1 CAP_GLY 8..74 CDD:214997 34/65 (52%)
Dynactin 553..834 CDD:289240 22/101 (22%)
clip1bXP_021335153.1 CAP_GLY 50..114 CDD:307465 34/64 (53%)
CAP_GLY 184..248 CDD:307465 9/63 (14%)
SH3_and_anchor <307..>410 CDD:275056 24/107 (22%)
SMC_N <368..721 CDD:330553 80/374 (21%)
CLIP1_ZNF 800..817 CDD:318782 5/7 (71%)
CLIP1_ZNF 840..856 CDD:318782
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1398
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.940

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