DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dysc and lnx2b

DIOPT Version :9

Sequence 1:NP_001261810.1 Gene:dysc / 39533 FlyBaseID:FBgn0264006 Length:1254 Species:Drosophila melanogaster
Sequence 2:NP_998105.2 Gene:lnx2b / 564464 ZFINID:ZDB-GENE-040426-2500 Length:678 Species:Danio rerio


Alignment Length:516 Identity:115/516 - (22%)
Similarity:163/516 - (31%) Gaps:193/516 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   219 KKRPISPEQVLRMFGATQSSSVPTSSYHYSNGGTRDRD--------RTGRRSPASSP--PSTTHQ 273
            ||||                     |::...|...|.|        ..||.:..|:|  |...:.
Zfish   146 KKRP---------------------SWNELKGSKSDGDLADAKSAQTIGRTAQLSAPSEPGLVNP 189

  Fly   274 IYRDRERERDRSVPNIHELTTRTVSMSRDQQIDHG--FGICVKGGKDSGLG-VYISRIEENSVAE 335
            .:.:.|.:.......:.|.|  .|.:.|:   |.|  .|:.:.||||:.|| :.|..|..:|:..
Zfish   190 AFEEGEDDTPLRCSLVAEAT--VVELFRE---DPGEDLGLRIVGGKDTPLGNIVIQEIVRDSLVA 249

  Fly   336 RAG-LRPGDTILEVNGTPFTSINHEEALKRCVQILKSSRQISMTVRAPPTLNSTAPLHGFGPPSR 399
            |.| |.|||.|||||.....||:|..|:   ..|.:...::.:||...         .||.|...
Zfish   250 RDGKLAPGDHILEVNDVSLASISHSRAI---AVIRQPCSRLRLTVMQE---------KGFKPRPE 302

  Fly   400 DPMYASMAPPL-------------------HPQNQAAAAAAAAAASGAG------LP-------- 431
            .....|.:||.                   |.:::|........:...|      ||        
Zfish   303 HHTQPSASPPTQSPSTNQNHGTVIQVTLVKHERSEALGIKLIRKSEEPGVFILDLLPGGLAAKDG 367

  Fly   432 -FRQTCSWMD------RHGRPAS-------------------------------------PPMEY 452
             .|.....:.      |||.|.|                                     |..:|
Zfish   368 KLRNNDKVLGINGQDLRHGTPESAAQIIQASEMRVNFVVMRLQDVSEEGGEGQSRGARRVPEPQY 432

  Fly   453 GGRRSER--------RDRIRRVELLIEPGQSLGLMIRGG--VEYGLGIFVTGVDKDSVADRSG-L 506
            ..|.||.        ..:.:.|.|..||.||||:.|.||  ....|.:::|.|.......|.| :
Zfish   433 FRRHSEYMKEPPGGFSSQEKTVTLKKEPRQSLGITIAGGRDCRSRLPVYITSVQPVGCLHRDGTV 497

  Fly   507 MIGDEILEVNGQSFLDVTHDEAVGQLKYHKRMSLV-IR--------------------------- 543
            ..||.:|.:||.....:|::|||..||.....|.| :|                           
Zfish   498 KTGDVLLSINGIDLTHLTYNEAVTVLKTQTAQSTVTLRVIQTFADDEEQDGESGSREDMDTMEGP 562

  Fly   544 ---DVGKVP------------HSCTSIEM-----EPWDAYSPTGTRARRKGQ----IATMV 580
               |:..||            |.|..|.:     |.| .:|..|.....:||    |.|:|
Zfish   563 KDDDINWVPLWTRWLGLPSCIHWCRDIMLMKTNSESW-GFSIVGGYEESRGQQPFFIKTIV 622

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dyscNP_001261810.1 PDZ_signaling 294..380 CDD:238492 31/89 (35%)
PDZ_signaling 466..543 CDD:238492 29/80 (36%)
HN_L-whirlin_R2_like 573..653 CDD:259823 5/12 (42%)
PDZ_signaling 886..971 CDD:238492
lnx2bNP_998105.2 RING 46..82 CDD:214546
PDZ_signaling 210..291 CDD:238492 30/86 (35%)
PDZ_signaling 325..406 CDD:238492 11/80 (14%)
PDZ_signaling 451..537 CDD:238492 30/85 (35%)
PDZ_signaling 587..671 CDD:238492 10/37 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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