DRSC/TRiP Functional Genomics Resources

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Protein Alignment dysc and lnx1

DIOPT Version :9

Sequence 1:NP_001261810.1 Gene:dysc / 39533 FlyBaseID:FBgn0264006 Length:1254 Species:Drosophila melanogaster
Sequence 2:XP_005160562.1 Gene:lnx1 / 561226 ZFINID:ZDB-GENE-030131-9439 Length:769 Species:Danio rerio


Alignment Length:570 Identity:127/570 - (22%)
Similarity:206/570 - (36%) Gaps:155/570 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    76 SGHHLRSSGAPG---PSSFEAEDIGMAFGMISPPPGSGPYVGSSAAAGGSRVGNSTSSLRGAGGR 137
            |...|..:..||   |||        |..::|..||........:....|:.|::||....:|.|
Zfish   168 STSELTLAALPGEGCPSS--------AIALLSDEPGLVNPAYEPSVEDNSQSGSTTSLAARSGSR 224

  Fly   138 SGLYYSPPGTS------------YTIVERPHSPHYYFN----------SAGVPTKGG--SLP--- 175
            ...|.:...||            ::::.|..|.....|          :|.:|.:|.  :||   
Zfish   225 KSEYRNFDRTSVRSRSFRRLNRAFSVLRRTKSGTAVANDTTEERDNLRNANIPAEGELFALPQLH 289

  Fly   176 -----GRGSA--YLSSSPASHMAAGTAGTLPTSTAASGRSMGQHASSNG---NKKRPISPEQVLR 230
                 |..::  ...:.|...:|....|...|...   |.:.|.....|   ...|.:..:.:|:
Zfish   290 HLIPDGEVTSIKITRADPCEPLAISIVGGNETPLV---RILIQDIYREGVIARDGRLLPGDMILK 351

  Fly   231 MFGATQSSSVPTSSYHYSNGG---------------TRDRDRTGRRSPASSPPSTTHQIYRDRER 280
            :.| ...|:||   :.|:...               .|.|.|:...||..:.|:.|..|      
Zfish   352 VNG-IDISNVP---HCYAVAALKQPCTLLRLTVLREQRHRYRSHHHSPTEAFPAHTATI------ 406

  Fly   281 ERDRSVPNIHELTTRTVSMSRDQQIDHGFGICVKGGKDSGLGVYISRIEENSVAERAG-LRPGDT 344
             ||.|   :|.:   .|..:.|:|:    ||.:....|.. ||:|..:.|..:|.|.| ||..|.
Zfish   407 -RDDS---LHVV---LVKRAPDEQL----GIKLVRRPDEH-GVFIFHLLEGGLAARDGRLRVDDR 459

  Fly   345 ILEVNGTPFTSINHE---EALKRCVQILKSSRQ-----ISMTVRAP-PTLNSTAPLHGFGPPSRD 400
            :|.:||       |:   .|.:....::::|..     :|.....| |.:...||.:..|||...
Zfish   460 VLAING-------HDLRYGAPEHAALLIQASEDRVHFIVSRQTHIPAPDILQEAPWNMEGPPPYS 517

  Fly   401 PMYASMAPPLHPQNQAAAAAAAAAASGAGLPFRQTCSWMDRHGRPASPPMEYGGRRSERRDRIRR 465
            |:...     |                         :.:|...:||...              :.
Zfish   518 PVDIE-----H-------------------------TLLDSCQKPACYE--------------KT 538

  Fly   466 VELLIEPGQSLGLMIRGGVE---YGLGIFVTGVDKDSVADRSG-LMIGDEILEVNGQSFLDVTHD 526
            |.||.||..|||:.:.||:.   :.|.::||.||.:.|..:.| :..||.:|.|||.....||..
Zfish   539 VTLLKEPHDSLGMTVAGGMSSRGWDLPVYVTNVDPNGVVGQEGSIRKGDILLNVNGVDLTGVTRS 603

  Fly   527 EAVGQLKYHKRMSLVIRDVGKVPHSCTSIEMEPWDAYSPTGTRARRKGQI 576
            |||..|| :....:|::.:...|.:.:|::..| ..:||........|.:
Zfish   604 EAVANLK-NTSSPVVLQVLEMRPPNESSLDCMP-PLHSPCALSPSSPGDV 651

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dyscNP_001261810.1 PDZ_signaling 294..380 CDD:238492 23/94 (24%)
PDZ_signaling 466..543 CDD:238492 31/80 (39%)
HN_L-whirlin_R2_like 573..653 CDD:259823 1/4 (25%)
PDZ_signaling 886..971 CDD:238492
lnx1XP_005160562.1 RING 57..93 CDD:214546
PDZ_signaling 297..381 CDD:238492 14/90 (16%)
PDZ_signaling 411..491 CDD:238492 23/94 (24%)
PDZ_signaling 536..621 CDD:238492 31/99 (31%)
DegQ <548..621 CDD:223343 26/73 (36%)
PDZ_signaling 678..762 CDD:238492
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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