DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dysc and gras-1

DIOPT Version :9

Sequence 1:NP_001261810.1 Gene:dysc / 39533 FlyBaseID:FBgn0264006 Length:1254 Species:Drosophila melanogaster
Sequence 2:NP_492164.1 Gene:gras-1 / 172549 WormBaseID:WBGene00009272 Length:245 Species:Caenorhabditis elegans


Alignment Length:99 Identity:28/99 - (28%)
Similarity:48/99 - (48%) Gaps:20/99 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   491 FVTGVDKDSVADRSGLMIGDEILEVNGQSFLDVTHDEAVGQLKYHKRMSLVI--RDVGKVPHSCT 553
            :|..|..||.|||.|:..||.::.||.:|.:..:|.|.|..:....::|||:  :||.::     
 Worm    91 YVDYVSADSPADRCGITRGDMVIAVNEKSVVTASHAEIVESIAQCLQVSLVLVFKDVARI----- 150

  Fly   554 SIEMEPWDAYSPTGTRARRKGQIATMVEEKARSL 587
             :|:            :.|..|:..|::.|.|.|
 Worm   151 -VEL------------SMRSIQLRFMLDAKIREL 171

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dyscNP_001261810.1 PDZ_signaling 294..380 CDD:238492
PDZ_signaling 466..543 CDD:238492 19/53 (36%)
HN_L-whirlin_R2_like 573..653 CDD:259823 5/15 (33%)
PDZ_signaling 886..971 CDD:238492
gras-1NP_492164.1 PDZ 67..145 CDD:238080 19/53 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.