DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dysc and Lnx2

DIOPT Version :9

Sequence 1:NP_001261810.1 Gene:dysc / 39533 FlyBaseID:FBgn0264006 Length:1254 Species:Drosophila melanogaster
Sequence 2:NP_542985.4 Gene:Lnx2 / 140887 MGIID:2155959 Length:687 Species:Mus musculus


Alignment Length:462 Identity:103/462 - (22%)
Similarity:163/462 - (35%) Gaps:144/462 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   196 GTLPTSTAASGRSMGQHASSNGNKKRPISPEQVLRMFGATQSSSVPTSSYHYSNGGTRDRDRTGR 260
            ||||..|..||...|:         |.::|            :|:|..:           :..|.
Mouse   173 GTLPPETDCSGTVPGE---------RNLTP------------ASLPVWT-----------EEPGL 205

  Fly   261 RSPASSPPSTTHQIYRDRERERDRSVPNIHELTTRTVSMSRDQ-QIDHGFGICVKGGKDSGL-GV 323
            .:||....:....:      ::..|:|. .|:||..:..|... |:    ||.:.||.::.| .:
Mouse   206 DNPAFEESAAADSV------QQPLSLPE-GEITTIEIHRSNPYIQL----GISIVGGNETPLINI 259

  Fly   324 YISRIEENSVAERAG-LRPGDTILEVNGTPFTSINHEEALKRCVQILKSSRQISMTVRAPPTLNS 387
            .|..:..:.|..|.| |..||.||:||....::::|..|  |.| :.:....:.:||.......|
Mouse   260 VIQEVYRDGVIARDGRLLAGDQILQVNNYDISNVSHNHA--RAV-LSQPCSTLQLTVLRERRFGS 321

  Fly   388 TAPLHGFGPPSRDPMY------------------------------------ASMAPPLHPQNQA 416
            .|..|..|...||.::                                    |:....|:..::.
Mouse   322 RANSHADGSAPRDEVFQVLLHKRDSTEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLNSNDRV 386

  Fly   417 AA-------------AAAAAAASGAGLPFRQTCSWMDRHGRP-----------------ASPPME 451
            .|             ||....|||..:...     :.|.|:|                 |.||..
Mouse   387 LAINGHDLKHGTPELAAQIIQASGERVNLT-----IARPGKPQPSNGSREAGAHSSSNHAQPPSH 446

  Fly   452 YGGRRSERRDRIR-------RVELLIEPGQSLGLMIRG--GVEYG-LGIFVTGVDKDSVADRSG- 505
              .|....:|..|       .:.:..||.:|||:.:.|  |.:.| |.||||.|.......|.| 
Mouse   447 --SRPGSHKDLTRCVTCQEKHITVKKEPHESLGMTVAGGRGSKSGELPIFVTSVPPHGCLARDGR 509

  Fly   506 LMIGDEILEVNGQSFLDVTHDEAVGQLKYHKRMSLVI---RDVGKVPHSCTSIEMEP-------W 560
            :..||.:|.:||....:::|.|||..||.......||   .:|.....:..:.|.:|       :
Mouse   510 IKRGDVLLNINGIDLTNLSHSEAVAMLKASAASPAVILKALEVQIAEEAAQATEEQPSAFSENEY 574

  Fly   561 DA-YSPT 566
            || :||:
Mouse   575 DASWSPS 581

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dyscNP_001261810.1 PDZ_signaling 294..380 CDD:238492 24/88 (27%)
PDZ_signaling 466..543 CDD:238492 29/83 (35%)
HN_L-whirlin_R2_like 573..653 CDD:259823
PDZ_signaling 886..971 CDD:238492
Lnx2NP_542985.4 mRING-HC-C3HC3D_LNX2 46..90 CDD:319694
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 145..175 1/1 (100%)
NPXY motif 207..210 1/2 (50%)
PDZ 229..315 CDD:214570 27/92 (29%)
PDZ_signaling 336..418 CDD:238492 8/86 (9%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 417..454 7/38 (18%)
PDZ_signaling 463..539 CDD:238492 27/75 (36%)
PDZ_signaling 596..680 CDD:238492
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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