DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hml and HPF1

DIOPT Version :9

Sequence 1:NP_524060.2 Gene:Hml / 39529 FlyBaseID:FBgn0029167 Length:3843 Species:Drosophila melanogaster
Sequence 2:NP_014487.1 Gene:HPF1 / 854010 SGDID:S000005515 Length:967 Species:Saccharomyces cerevisiae


Alignment Length:491 Identity:89/491 - (18%)
Similarity:145/491 - (29%) Gaps:160/491 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 ILKAPAVSARYTYG-GSEGGRSGFGGGYGVGGGGGG---GYGGIKTSHA-------AGGLLTKTL 114
            :|.|...::::::. |:....|||....|...|...   .|||:..|.|       ..|....|.
Yeast   577 VLTATQGNSQFSFSIGTGFSSSGFNVSEGTFAGAYAYYLNYGGVVASSATPSSTSTTSGATNSTS 641

  Fly   115 GFLGMGGQ--GSQGNFYGGGGHFLAAFGKCSALQLPSNVQSECHNGRCKVFCPTGYSFAQDVSVL 177
            |....|..  ||..:         .:||    ..:..:..|...:|...|:..| .::|...|.:
Yeast   642 GSTSFGASVTGSTAS---------TSFG----ASVTGSTASTLISGSPSVYTTT-LTYATTTSTV 692

  Fly   178 EMFCSNDGWIIGN-----------SVFAEVPPC-QAQC-----------------------TPPC 207
            .:.||......||           |..|.:..| :..|                       ...|
Yeast   693 VVSCSETTDSNGNVYTITTTVPCSSTTATITSCDETGCHVTTSTGTVATETVSSKSYTTVTVTHC 757

  Fly   208 QNNGICISAGVCQCPENYYGPLCQQKKSICASFPKAPKNSKVS-CKNNMCHAECMRGFQFPDGSG 271
            .|||........:|||         :.|...:.||:.....|: |.:|.|               
Yeast   758 DNNGCNTKTVTSECPE---------ETSATTTSPKSYTTVTVTHCDDNGC--------------- 798

  Fly   272 ITNIECRNGQWVHTKTGLSKTPDC-APTCAPACQNGGQCISFNVCQCSKMFRGDHCQYNIDRCNV 335
                        :|||..|:.|:. ..|.:|....     :..|.||..           :.|:.
Yeast   799 ------------NTKTVTSEAPEATTTTVSPKTYT-----TATVTQCDD-----------NGCST 835

  Fly   336 -TNTNFNGNYKCAYEMDDARCTFSCPQVPGLKIQGRIDIEYKCNYLQGQYLPAPLPKCIFPPGYT 399
             |.|:     :...|..:...|.:.|:........:.| :..||.   :.:.:.:|:.......|
Yeast   836 KTVTS-----EAPKETSETSETSAAPKTYTTATVTQCD-DNGCNV---KIITSQIPEATSTVTAT 891

  Fly   400 VRSTSSMQGVTHQNGVYHRGMSGEMAYELQTERQKLLALLAKYRDLERRSEWWSSEETVVTMSSY 464
            ..|..|...||.:         |..|..|.|...|..:.::.|          |.....:..|:.
Yeast   892 SASPKSYTTVTSE---------GSKATSLTTAISKASSAISTY----------SKSAAPIKTSTG 937

  Fly   465 SLYQSNNLDIVIDKTPRPALCTTWGGINMKTFDGLV 500
            .:.||..:.               .|:|..|.:.||
Yeast   938 IIVQSEGIA---------------AGLNANTLNALV 958

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmlNP_524060.2 VWD 485..636 CDD:295339 5/16 (31%)
C8 680..754 CDD:285899
TIL 758..811 CDD:280072
VWD 840..1015 CDD:214566
C8 1054..1121 CDD:214843
TIL 1131..1185 CDD:280072
TIL 1245..1298 CDD:280072
VWD 1327..1498 CDD:214566
C8 1535..1609 CDD:214843
Mucin2_WxxW 1751..1837 CDD:290069
TIL 1938..2005 CDD:280072
FA58C 2089..2223 CDD:238014
FA58C 2104..2225 CDD:214572
FA58C <2299..2404 CDD:214572
FA58C <2299..2403 CDD:238014
VWD 2703..2858 CDD:295339
C8 2893..2970 CDD:285899
TIL 2974..3030 CDD:280072
VWD 3035..3198 CDD:295339
C8 3257..3313 CDD:285899
VWC 3397..3451 CDD:302663
GHB_like <3755..3813 CDD:304424
HPF1NP_014487.1 Hyphal_reg_CWP 337..617 CDD:403079 8/39 (21%)
Herpes_BLLF1 <643..937 CDD:282904 66/387 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1216
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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