DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hml and Bmper

DIOPT Version :9

Sequence 1:NP_524060.2 Gene:Hml / 39529 FlyBaseID:FBgn0029167 Length:3843 Species:Drosophila melanogaster
Sequence 2:NP_082748.1 Gene:Bmper / 73230 MGIID:1920480 Length:685 Species:Mus musculus


Alignment Length:691 Identity:177/691 - (25%)
Similarity:263/691 - (38%) Gaps:176/691 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly  1085 CLYDTCACKDEMSKCFCPILSAYGTECMRQGVKTGWRMSVKE---CAVKCPLGQVFDECGDGCAL 1146
            ||.....||.|.    ||:||   .:|         .:::|:   |..:|          .||..
Mouse    72 CLNKEVTCKREK----CPVLS---RDC---------ALAIKQRGACCERC----------KGCTH 110

  Fly  1147 SCD--------DLPSKGSCKRECVEG------------CRCPHGEYVNEDGECVPKKMC-HCNFD 1190
            ...        ..|::....|:|.||            |:.|    ....|.|.|  .| .|.|:
Mouse   111 EGRTYNSSFKWQTPAEPCVLRQCQEGVVTESEVRCVVHCKNP----AEHQGACCP--TCPGCVFE 169

  Fly  1191 GMSFRPGYKEVRP-GEKFLDLCTCTDGVWDC-QDAEP----GDKDKYPPSSELRSKCAKQ----- 1244
            |:.:|.| :|.:| |.|.: .|:|..|...| ::..|    .....:.||.:...||..|     
Mouse   170 GVQYREG-EEFQPEGNKCI-TCSCVGGRTQCVREVCPILSCPQHLSHTPSGQCCPKCLGQRKVFD 232

  Fly  1245 -------------------PYAEFTKCAPKE-----PKTCKNMDKYVADSSDCLPGCVCMEGYVY 1285
                               .|...|.|..|:     .|.|.:.....:|...|...|        
Mouse   233 LPFGSCLFRSDVYDNGASFVYDNCTVCTCKDSTMVCKKKCSHPGVCNSDEDACCEDC-------- 289

  Fly  1286 DTSRLACVLPANCS-CHHAGKSYDDGEKIKE-DCNLCECRAGNWKCSKNGC-------------- 1334
                |..|.|.:.. |....|.:.|||.... :|::|.|..|..:|.|..|              
Mouse   290 ----LLRVPPEDIKVCKFGSKIFRDGEMWSSVNCSICACVKGKTECRKKQCVPVSSCPQGKILNR 350

  Fly  1335 ----------ESTCSVWGDSHFTTFDGHDFDFQGACDYVLAKGVFDNGDGFSITIQNVLCGTMGV 1389
                      ...|:|:||.|:.||||..|:|||.|.|||.|........|.:.::|....|...
Mouse   351 KGCCPICTEKPGVCTVFGDPHYNTFDGRTFNFQGTCQYVLTKDCSSPASPFQVLVKNDARRTRSF 415

  Fly  1390 TCSKSLEIAL---TGHAEESLLLSADSAYSTDPNKTPIKKLRDSVNSKGHNAFHIYKAGVFVVVE 1451
            :.:||:|:.|   |...::.|.:..:.:....|..||            |  |||...|..:.| 
Mouse   416 SWTKSVELMLGESTVSLQQHLTVRWNGSRIALPCHTP------------H--FHIDLDGYLLKV- 465

  Fly  1452 VIPLKLQVKWDEGTRVYVKLGNEWRQKVSGLCGNYNGNSLDDMQTPSMGLETSPMLFGHAWKLQP 1516
            .....|::.||..:.|.|......:.|:.||||||||:..||:.......:.....|..:|:::.
Mouse   466 TTRAGLEISWDGDSFVEVMAAPHLKGKLCGLCGNYNGHKRDDLIGGDGNFKFDVDDFAESWRVES 530

  Fly  1517 H--CSAPV-API-DACKKHPERETWAQLKCGALKSDLFKECHAEVPLERFWKRCIFDTCACDQGG 1577
            :  |:.|. .|: :.|:...:.:..|..:|..|||..|:.||:.|....|::.|:.|.|.|....
Mouse   531 NEFCNRPQRKPVPELCQGTVKVKLRAHRECQKLKSWEFQTCHSTVDYTTFYRSCVTDMCECPVHK 595

  Fly  1578 DCECLCTAVAAYADACAQKGINIRWRSQHFC-PMQCDPHCSDYKACTPACAVETCDNFLDQGIAE 1641
            :  |.|.:..||..||.::||.:.|..|..| ..|| .|.:.|..|.|.| |:||||:.:.|   
Mouse   596 N--CYCESFLAYTRACQREGIKVHWEPQQSCAATQC-KHGAVYDTCGPGC-VKTCDNWNEIG--- 653

  Fly  1642 RMCNRENCLEGCHIKPCEDGFIYLNDTYRDCVPKAEC-KPV 1681
             .||:. |:.|||   |....:         :.|..| |||
Mouse   654 -PCNKP-CIAGCH---CPANLV---------LHKGRCIKPV 680

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmlNP_524060.2 VWD 485..636 CDD:295339
C8 680..754 CDD:285899
TIL 758..811 CDD:280072
VWD 840..1015 CDD:214566
C8 1054..1121 CDD:214843 10/35 (29%)
TIL 1131..1185 CDD:280072 13/73 (18%)
TIL 1245..1298 CDD:280072 12/57 (21%)
VWD 1327..1498 CDD:214566 55/197 (28%)
C8 1535..1609 CDD:214843 25/74 (34%)
Mucin2_WxxW 1751..1837 CDD:290069
TIL 1938..2005 CDD:280072
FA58C 2089..2223 CDD:238014
FA58C 2104..2225 CDD:214572
FA58C <2299..2404 CDD:214572
FA58C <2299..2403 CDD:238014
VWD 2703..2858 CDD:295339
C8 2893..2970 CDD:285899
TIL 2974..3030 CDD:280072
VWD 3035..3198 CDD:295339
C8 3257..3313 CDD:285899
VWC 3397..3451 CDD:302663
GHB_like <3755..3813 CDD:304424
BmperNP_082748.1 VWC 166..224 CDD:278520 16/59 (27%)
VWC 301..357 CDD:302663 12/55 (22%)
VWD 364..508 CDD:278521 51/158 (32%)
C8 556..624 CDD:285899 24/69 (35%)
TIL 629..682 CDD:280072 24/71 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1216
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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