DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hml and Chrdl2

DIOPT Version :10

Sequence 1:NP_524060.2 Gene:Hml / 39529 FlyBaseID:FBgn0029167 Length:3843 Species:Drosophila melanogaster
Sequence 2:NP_001278249.1 Gene:Chrdl2 / 69121 MGIID:1916371 Length:433 Species:Mus musculus


Alignment Length:407 Identity:80/407 - (19%)
Similarity:124/407 - (30%) Gaps:125/407 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly  3349 EAVVHTVKTDEMCLSSERFEGCFCPPGKVMDGGQCVPEIACTKCDDGLHLPDEKWK-------KD 3406
            |.|.|:...:...:|.   ...|...|||...|            :.::.|.:.|.       ..
Mouse    14 EPVAHSCIQEFFIVSQ---PSLFARSGKVCLFG------------EKIYTPGQSWHPYLEPQGTI 63

  Fly  3407 KCTECQCDSKGKTTCVEKKCQVEENICAEGYRPETIVSVDECCPRYRCVPETKDPSKLCLAPLVP 3471
            .|..|.|...|...|...:|....  |:     :.::...:||||             |:.|.||
Mouse    64 YCVRCTCSENGHVNCYRLRCPPLH--CS-----QPVMEPQQCCPR-------------CVDPHVP 108

  Fly  3472 ICGPGQFKKEKKDVNGCSQYICECIPKDQC----------EIIELRELLPGEIIVNVEEGCCPTQ 3526
                          :|..      :|...|          ||...:||.|..:    ...|....
Mouse   109 --------------SGLR------VPLKSCQLNETTYQHGEIFSAQELFPARL----SNQCVLCS 149

  Fly  3527 KIE----CKPETCPKAPVNCQERFYEVKTIKEPGMCCSKHSCVPPKDLCIVQYELDEATKFTKTV 3587
            .||    |...|||:.  :|.      .|:..|..||  .:|   ||........:..|:...  
Mouse   150 CIEGHTYCGLMTCPEP--SCP------TTLPLPDSCC--QTC---KDRTTESSTEENLTQLQH-- 199

  Fly  3588 GDKWTHAKEVCKQETCSYGPDGNAQVVSTLEQCLTDCAPGF---SYQNLDKTKCCGKCV-----Q 3644
            |::  |:::.|.:..   ||...|.  ::|...|     ||   .:|::.......|.:     :
Mouse   200 GER--HSQDPCSERR---GPSTPAP--TSLSSPL-----GFIPRHFQSVGMGSTTIKIILKEKHK 252

  Fly  3645 TSCIFEQKLYEVNALWK------SADNCTTYSCLKKDGQFLVTTSREVCPDVGSCLSHLLYQDGC 3703
            .:|....|.|....:|.      ....|...:|:  ||  .....|..||....|.........|
Mouse   253 KACTHNGKTYSHGEVWHPTVLSFGPMPCILCTCI--DG--YQDCHRVTCPTQYPCSQPKKVAGKC 313

  Fly  3704 CKRCKSEPLVEDKSSCL 3720
            ||.|..:...:|.|..:
Mouse   314 CKICPEDEAEDDHSEVI 330

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmlNP_524060.2 VWD 485..636 CDD:459671
C8 684..754 CDD:462584
TIL 758..811 CDD:410995
VWD 840..1015 CDD:214566
C8 1054..1121 CDD:214843
TIL 1131..1185 CDD:410995
TIL 1245..1298 CDD:460351
VWD 1327..1498 CDD:214566
C8 1535..1609 CDD:214843
TIL 1938..2005 CDD:473303
FA58C 2089..2223 CDD:238014
FA58C <2299..2403 CDD:238014
VWD 2703..2858 CDD:459671
TIL 2974..3030 CDD:460351
VWD 3035..3198 CDD:459671
C8 3248..3313 CDD:462584
VWC 3397..3451 CDD:450195 11/60 (18%)
GHB_like <3755..3813 CDD:473907
Chrdl2NP_001278249.1 VWC 40..102 CDD:450195 14/93 (15%)
VWC 255..317 CDD:450195 15/65 (23%)
CHRDL_1_2_C 352..>414 CDD:437380
Blue background indicates that the domain is not in the aligned region.

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