DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hml and cv-2

DIOPT Version :9

Sequence 1:NP_524060.2 Gene:Hml / 39529 FlyBaseID:FBgn0029167 Length:3843 Species:Drosophila melanogaster
Sequence 2:NP_524809.2 Gene:cv-2 / 45280 FlyBaseID:FBgn0000395 Length:751 Species:Drosophila melanogaster


Alignment Length:644 Identity:147/644 - (22%)
Similarity:232/644 - (36%) Gaps:207/644 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly  1090 CACKDEMSKC--FCPILS-------AYGTECMR------QGVK----TGWRMSVKEC-AVKCPLG 1134
            |.|::....|  .||.::       :.||.|.|      :|:.    :.|......| ..|| :.
  Fly    87 CECQNGFVNCRDTCPPVNDCYILDKSNGTCCRRCKGCSFRGMSYESGSEWNDPEDPCKTYKC-VA 150

  Fly  1135 QVFDECGDGCALSCDD----LPSKGSCKRECVEGCR----------------------------- 1166
            .|..|....|...||:    .|..|.|...| :||:                             
  Fly   151 TVVTETIQKCYSQCDNNQLQPPRPGECCPTC-QGCKINGQTVAEGHEVDASIDDRCLVCQCRGTQ 214

  Fly  1167 ------------CPHGEYVNEDGECVPKKMCHCNFDGMSFRP------GYKEVRPGE-KFL---- 1208
                        ||..:.:....||.|:  |..|.   ||.|      ..|.|.|.: :|:    
  Fly   215 LTCSKKTCPVLPCPMSKQIKRPDECCPR--CPQNH---SFLPVPGKCLFNKSVYPEKTQFMPDRC 274

  Fly  1209 DLCTCTDGVWDCQDAEPGDKDKYPPSSELRSKCAKQPYAEFTKCAP--KEPKTCKNMDKYVADSS 1271
            ..|||.:|...||                      :|.....:|||  :||..|..........|
  Fly   275 TNCTCLNGTSVCQ----------------------RPTCPILECAPEFQEPDGCCPRCAVAEVRS 317

  Fly  1272 DCLPGCVCMEGYVYDTSRLACVLPANCSCHHAGKSYDDGEKIKEDCNLCECRAGNWKCSKNGCES 1336
            :|     .::|.||..:                :::|.|     .|..|.|..|..:|::..|.:
  Fly   318 EC-----SLDGIVYQNN----------------ETWDMG-----PCRSCRCNGGTIRCAQMRCPA 356

  Fly  1337 -------------------------TCSVWGDSHFTTFDGHDFDFQGACDYVLAKGVFDNGDGFS 1376
                                     ||:|:||.||.||||..|.|||:|.|:||....  |..|.
  Fly   357 VKCRANEELKQPPGECCQRCVETAGTCTVFGDPHFRTFDGKFFSFQGSCKYLLASDCM--GKTFH 419

  Fly  1377 ITIQNVLCGTMGVTCSKSLEIALTGHAEESLLLSADSAYSTDPNKTPIKKLRDSVN-SKGHNAFH 1440
            |.:.|...||...:.:|::.::|     .:|.::..            :::|..|| ::....:.
  Fly   420 IRLTNEGRGTRRASWAKTVTLSL-----RNLKVNLG------------QRMRVKVNGTRVTLPYF 467

  Fly  1441 IYKAGVFVVVEVI----------PLKLQVKWDEGTRVYVKLGNEWRQKVSGLCGNYNGNSLDDM- 1494
            :...|..|.:|.:          .:.|.::|:....:.|.:..::::::.|||||:||:|.||: 
  Fly   468 VVAGGQNVTIERLANGGAVMLRSEMGLTLEWNGAGFLQVSVPAKFKKRLCGLCGNFNGSSRDDLT 532

  Fly  1495 --QTPSMGLETSPMLFGHAWKL--QPHCSAP---VAPIDACKKHPERETWAQLKCGALK-SDLFK 1551
              ...|.| :.....|.::||:  ...||..   :|....|.|..     :...|..|. ..||.
  Fly   533 GKDGRSHG-DDEVWHFANSWKVGGPKSCSRKREFLAATPTCDKRK-----SNFYCHPLSVPALFG 591

  Fly  1552 ECHAEVPLERFWKRCIFDTCACDQGGDCECLCTAVAAYADACAQKGINI-RWRSQHFCP 1609
            ||:..:..|.:...|..|.|.|..|   :|.|.:.||||..|.:.|:.: .|||...||
  Fly   592 ECNERLNPENYKAACRMDVCECPSG---DCHCDSFAAYAHECRRLGVQLPDWRSATNCP 647

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmlNP_524060.2 VWD 485..636 CDD:295339
C8 680..754 CDD:285899
TIL 758..811 CDD:280072
VWD 840..1015 CDD:214566
C8 1054..1121 CDD:214843 10/49 (20%)
TIL 1131..1185 CDD:280072 17/98 (17%)
TIL 1245..1298 CDD:280072 12/54 (22%)
VWD 1327..1498 CDD:214566 49/209 (23%)
C8 1535..1609 CDD:214843 23/75 (31%)
Mucin2_WxxW 1751..1837 CDD:290069
TIL 1938..2005 CDD:280072
FA58C 2089..2223 CDD:238014
FA58C 2104..2225 CDD:214572
FA58C <2299..2404 CDD:214572
FA58C <2299..2403 CDD:238014
VWD 2703..2858 CDD:295339
C8 2893..2970 CDD:285899
TIL 2974..3030 CDD:280072
VWD 3035..3198 CDD:295339
C8 3257..3313 CDD:285899
VWC 3397..3451 CDD:302663
GHB_like <3755..3813 CDD:304424
cv-2NP_524809.2 VWC 184..243 CDD:214564 6/60 (10%)
VWC 256..310 CDD:278520 17/75 (23%)
VWC 319..376 CDD:214564 12/82 (15%)
VWD 371..536 CDD:214566 47/183 (26%)
C8 580..646 CDD:285899 23/68 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45452754
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1216
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm14676
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.740

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