DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hml and crim1

DIOPT Version :9

Sequence 1:NP_524060.2 Gene:Hml / 39529 FlyBaseID:FBgn0029167 Length:3843 Species:Drosophila melanogaster
Sequence 2:NP_997986.1 Gene:crim1 / 404210 ZFINID:ZDB-GENE-040312-2 Length:1027 Species:Danio rerio


Alignment Length:909 Identity:178/909 - (19%)
Similarity:269/909 - (29%) Gaps:395/909 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly  3175 PSIKYGSKMEGLCGDCNGNAGND-----LQPNPAKKKAGVDVIQ------------------SWQ 3216
            |.:..||..:...|:|.....:|     .:|.......|.::|.                  |.:
Zfish    88 PPLNGGSITQYEVGNCEDENWDDDQLLGFEPCNENLVTGCNIIDGKCECDSVRTCNNPFEFASQE 152

  Fly  3217 ADEPKLGLVEECLSEDVPKEHC----IPLPPEKDPCLQFYNAELFGK-CPLAVDPIAYVSACQQD 3276
            |.:..|..:|| ...|..|..|    .|..||....::.|...  |: |||....:...:.|.:.
Zfish   153 ACQTALQKIEE-ERPDCSKARCEVQFSPRCPEDSILIEGYAPP--GECCPLPSRCVCSPAGCLRK 214

  Fly  3277 ICKPGNT---------QQGVCVALAAYAKECNQ--HGICTNWRRPQLCPYECPSDMVYEP----- 3325
            :|:||:.         :.|.|..|    .||..  ...|:....|.:.|.:||:|. ||.     
Zfish   215 VCQPGHLNILVSKSSGKPGECCDL----YECKPVFSVDCSTVECPPVKPVQCPADS-YETQVRLT 274

  Fly  3326 ----CGCAKNCDTIKALSEFDAVSLKNEAVVHTVKTDEMCLSSERFEGCFCPPGKVMDGGQCVPE 3386
                |.....|:.:..|..|...|......|           ..|.:|   .||:..|..:||.|
Zfish   275 ADGCCTLPTRCECLPGLCTFPQCSAGMSPQV-----------MSRGDG---TPGRCCDVFECVNE 325

  Fly  3387 I--ACT--------------------KCDDGL----------------HLPD------------- 3400
            .  |||                    :|..|:                ::||             
Zfish   326 TKPACTLNGVEYHDGDMFRMDACRFCRCQGGVSVCFTAQCGVLHCERYYVPDGECCPVCEDPIYP 390

  Fly  3401 -----------------EKWKKDKCTECQCDSKGKTTCVEKKCQVEENICAEGYRPETIVSVDEC 3448
                             :.|::|.||.|||.| |...||...|   .:.|   ..|.|:..  ||
Zfish   391 VLSLAGCYVNGQILAHGDHWREDDCTFCQCVS-GDARCVAAAC---GHSC---LNPVTVPG--EC 446

  Fly  3449 CPRYRCVPETKDPSKLCLAPLVPICG--------------------------------------- 3474
            |      |..::|:.:.:||  |.||                                       
Zfish   447 C------PVCEEPTYITMAP--PACGSLDNCTLLEQSCAFGFRLDPSGCRTCACKSREELCGGLM 503

  Fly  3475 -------PGQFKKEKKDVNGCSQYICECIPK-DQCEIIELRELLPGEIIVNVEEGCCPTQKIECK 3531
                   |..|   :.|::||.  :|:|.|: .:|:.:...:..|...|.| :.||     ..|:
Zfish   504 ASCTLKCPFGF---QTDIHGCD--VCQCRPRHKKCKAVACAKDCPFGYIKN-KHGC-----DTCR 557

  Fly  3532 PETCPKAPVN----------------CQERFYEVKTIK---EPGMCCS----KHSCVPPKDLCIV 3573
            .:.||:.|.:                ||.|.....::.   :.|.|.|    :|           
Zfish   558 CKKCPELPCDKACPMGFQHDELGCLICQCRDQSSSSVTPAVKLGSCLSMDGRRH----------- 611

  Fly  3574 QYELDEATKFTKTVGDKWTHA-KEVCKQETCSYGPDGNAQVVSTLEQCLTDCAPGFSYQNLDKTK 3637
                :....:.....|.:.|| :|:|...:|...|..|..:           .||         .
Zfish   612 ----ENGQSWHDGCRDCYCHAGREMCALISCPVPPCDNPTI-----------RPG---------H 652

  Fly  3638 CCGKCVQTSCIFEQKLYEVNA-------------LWKSADNCTTYSCLKKDGQFLVTTSREVCPD 3689
            ||..|.:.|...:.:|.|.:.             .| :.|:||..:|  ..|:.|..|  ||||.
Zfish   653 CCPTCPEESSSHKPELSEASVCLAPGGEYFVEGETW-NIDSCTQCTC--HSGRVLCET--EVCPP 712

  Fly  3690 VGSCLSHLLYQDGCCKRCKSEPLV---------------ED------------------------ 3715
            : .|.|.:..||.||..|..:|:.               ||                        
Zfish   713 L-LCHSPIRTQDSCCPHCPDDPVTPQTPSNDSMPSYCRNEDGDIFLAAESWKPNVCSSCVCLDGA 776

  Fly  3716 ----KSSCLPVSLAESRTKEILKFPVQGHGT----CVNADPIQGFTDCEGACSSGSKYNTLTDMH 3772
                ..||.||:.|.         ||...|.    |::|.|       ...|    .:|..|.|.
Zfish   777 ISCFSESCPPVNCAR---------PVLRKGQCCPYCLDATP-------RAVC----HFNGKTYMD 821

  Fly  3773 EK----------FC----TCCSIKS------YHPISVKMICDDGHTFTQKHEVPSNCGCSPCSE 3816
            |:          :|    |.||..|      :.|::|:..|                 |..|.|
Zfish   822 EERWDIDSCTHCYCLQGQTLCSTVSCPALPCHQPLTVEGSC-----------------CPMCPE 868

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmlNP_524060.2 VWD 485..636 CDD:295339
C8 680..754 CDD:285899
TIL 758..811 CDD:280072
VWD 840..1015 CDD:214566
C8 1054..1121 CDD:214843
TIL 1131..1185 CDD:280072
TIL 1245..1298 CDD:280072
VWD 1327..1498 CDD:214566
C8 1535..1609 CDD:214843
Mucin2_WxxW 1751..1837 CDD:290069
TIL 1938..2005 CDD:280072
FA58C 2089..2223 CDD:238014
FA58C 2104..2225 CDD:214572
FA58C <2299..2404 CDD:214572
FA58C <2299..2403 CDD:238014
VWD 2703..2858 CDD:295339
C8 2893..2970 CDD:285899
TIL 2974..3030 CDD:280072
VWD 3035..3198 CDD:295339 6/27 (22%)
C8 3257..3313 CDD:285899 15/67 (22%)
VWC 3397..3451 CDD:302663 20/83 (24%)
GHB_like <3755..3813 CDD:304424 14/77 (18%)
crim1NP_997986.1 IGFBP 33..84 CDD:278641
Cell attachment site. /evidence=ECO:0000255 308..310 1/1 (100%)
VWC 330..384 CDD:214564 6/53 (11%)
VWC 397..450 CDD:302663 19/67 (28%)
Antistasin 561..586 CDD:280912 4/24 (17%)
VWC 607..657 CDD:302663 13/84 (15%)
VWC 678..729 CDD:302663 18/56 (32%)
VWC 751..803 CDD:302663 10/60 (17%)
VWC 812..866 CDD:302663 14/74 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 877..897
Cell attachment site. /evidence=ECO:0000255 883..885
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1216
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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