DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hml and Rcd2

DIOPT Version :10

Sequence 1:NP_524060.2 Gene:Hml / 39529 FlyBaseID:FBgn0029167 Length:3843 Species:Drosophila melanogaster
Sequence 2:NP_649244.3 Gene:Rcd2 / 40283 FlyBaseID:FBgn0037012 Length:452 Species:Drosophila melanogaster


Alignment Length:349 Identity:68/349 - (19%)
Similarity:113/349 - (32%) Gaps:101/349 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly  3360 MCLSSERFEGCFCPPGKVMDGGQCVPEIACTKCDDGLHLPDEKWKKDKCTECQCDSKGKTTCVEK 3424
            :||.....:.|..|   ::|.......:||..|::...:                      |.:.
  Fly     7 ICLLLRILQSCAMP---IIDPDSIDESLACPPCENDFPI----------------------CYKV 46

  Fly  3425 KCQVEENICAEGYRPETIVSVDECCPRYRCVPETKDPSKLCLAPLVPICGPGQFKKEKKDVNGCS 3489
            ..:||......|          .|||||.|:.|.            |:|...:.:..|   |.|:
  Fly    47 IVEVERGNGLPG----------SCCPRYECLDEE------------PVCDGSKRRFYK---NKCT 86

  Fly  3490 QYICECIPKDQCE--IIELRELLPGE----IIVN------------VEEGCCPTQKIECKPETCP 3536
              :|     |.||  .|:.:|:.|.|    |.::            :|...|.|  ..|:.....
  Fly    87 --VC-----DPCEPLAIQCKEICPMEEPEPICLSDNNEYHRNGDIWMENNGCTT--CMCEGGYVT 142

  Fly  3537 KAPVNCQERFYEVKTIKEPGMCCSKHSCVPPKDLCIVQYELDEAT-KFTKTVGDKWTHAKEVCKQ 3600
            :..|.|...:.....::..|.||.    |.|.:|.:.....|:.. |:..|     |.|..:.:.
  Fly   143 RNAVQCNHYYRCNNPVEVKGQCCP----VCPDELGVSNSIYDDGNHKYRNT-----TSAPILGES 198

  Fly  3601 ETCSYGPDGNAQVVSTLEQCLTDCAPGFSYQNLDKTKCCGKCVQTSCIFEQKLYEVNALWKSADN 3665
            |:.|.|..      ||:....:|..|        .|........||..........:.|..|.:.
  Fly   199 ESSSSGWS------STVPTDTSDSVP--------DTSGSPNSSSTSSELATPTPNTSELSSSTER 249

  Fly  3666 CTTYSCLKKDGQFLVTTSREVCPD 3689
            .:|.|..::.|:|..:.|.::..|
  Fly   250 TSTDSSYEQLGEFATSESPDLRTD 273

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmlNP_524060.2 VWD 485..636 CDD:459671
C8 684..754 CDD:462584
TIL 758..811 CDD:410995
VWD 840..1015 CDD:214566
C8 1054..1121 CDD:214843
TIL 1131..1185 CDD:410995
TIL 1245..1298 CDD:460351
VWD 1327..1498 CDD:214566
C8 1535..1609 CDD:214843
TIL 1938..2005 CDD:473303
FA58C 2089..2223 CDD:238014
FA58C <2299..2403 CDD:238014
VWD 2703..2858 CDD:459671
TIL 2974..3030 CDD:460351
VWD 3035..3198 CDD:459671
C8 3248..3313 CDD:462584
VWC 3397..3451 CDD:450195 6/53 (11%)
GHB_like <3755..3813 CDD:473907
Rcd2NP_649244.3 VWC 114..168 CDD:214564 9/59 (15%)
Blue background indicates that the domain is not in the aligned region.

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