DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hml and shot

DIOPT Version :9

Sequence 1:NP_524060.2 Gene:Hml / 39529 FlyBaseID:FBgn0029167 Length:3843 Species:Drosophila melanogaster
Sequence 2:NP_725339.1 Gene:shot / 36542 FlyBaseID:FBgn0013733 Length:8805 Species:Drosophila melanogaster


Alignment Length:977 Identity:185/977 - (18%)
Similarity:299/977 - (30%) Gaps:356/977 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly  1995 DEDTCVHADECPCMDKAEHYVQPHKPVLGEFEVC----------QCIDNAFTCVPN--------- 2040
            ||:|      |..::...::..|...|:...|..          |.||.....|.|         
  Fly  2468 DEET------CEILENTSNFTNPKGEVVNITEALNTGLIDGRRGQVIDPQNNRVLNLRQAVEQKI 2526

  Fly  2041 --------------KPEPVPKDEDDDL------DLVSVVPIYPVTLTPPLQCSPERLIP--KIEN 2083
                          |...||:..|..|      .:|.....||:::...:.|  |.|.|  |:..
  Fly  2527 IDSEQTNHILMPLAKSLSVPRLADQGLIDPQTQTIVHPESGYPLSIHEAIVC--EVLDPHSKLHK 2589

  Fly  2084 PAH------------SLPDSIFNASSQLAPEHGPKMARLTKEQPRGSWSPSINDQMQYLEL---- 2132
            |..            :..||.||..:        |...:|:......:.||.:.|...:|:    
  Fly  2590 PEKCTLEEAITKGIINADDSTFNYKN--------KTLNITEAIEAKLFDPSYDQQKSKVEIPPVG 2646

  Fly  2133 -------NFAKPEPFYGVVMAGSPEFDNYVTLFKILHSHDGIAYHYLVDETEKPQ---------M 2181
                   ..:..||...||:..|.:        |.|.....|..::::.....|:         |
  Fly  2647 MIFPVAVEKSLVEPSKRVVLHPSTK--------KALPIKQAIEENFIMSIPYSPKPDAIEVVTAM 2703

  Fly  2182 FNGPLDSRAPVQTLFKIPIEASSLRIYPLKWHGSIAMRVELLICGDKEE----PKPVPTVSTILP 2242
            ....:|..|  |||   .:.::..|| ||:.    ||...:|:..:..:    .||:|  .|.:.
  Fly  2704 EQDLIDVAA--QTL---TVPSTGERI-PLRQ----AMENGVLVVKNLSDFVITQKPIP--KTEIM 2756

  Fly  2243 ITERPARLVDLECIDLMGVDEGKMY--QDQVQSSSLWQQPNLGKKLQLLELLKLSTPLAWRPLAN 2305
            .|.|....|..:.|:||   :|.:.  .::||:.:..:..:|.:..:|..|.:.||....:..|.
  Fly  2757 ETVRAVHTVTTKTIELM---QGYVLISNNEVQNVNTGEVCSLEEAKELGILREESTTRETKAAAG 2818

  Fly  2306 SQNEFI--------EFDFLEPR------------------------------NISGFVTKGGPD- 2331
            ...|.:        :...:|.|                              ::|...|||..: 
  Fly  2819 ESPESVGDVGTSGDQTVIVEERTQTVVVSSDTRKQEMQVVSTTQSTKDTSVPSVSEIETKGSKEP 2883

  Fly  2332 ---------------------------GWVTGYKVMF-SKKKPTWNTVLSTDGQARIFEANHDAE 2368
                                       ..|:|.|.:. |.|.||        ..|:..|...:.:
  Fly  2884 SKTLQNVKDAAKLGALGVIAAPVLAGGAIVSGVKSLIKSVKSPT--------EDAKSTEKPKEPQ 2940

  Fly  2369 T-----ERRHHFK--------NPILTQ---YIKIVPAYWEKNINMRIEPLGCFLPYPEIQRQVPV 2417
            |     |||...:        :.:|::   :|....|.:..|...:.:|           ..:|.
  Fly  2941 TSFIEQERRKELQPQQVPSEVDNLLSETENFISSTTANFIANEKQQDKP-----------DTLPQ 2994

  Fly  2418 EESKPTKCNICDGVSTSSSTTGCQCQDQLFWDGNTCVQHNLCPCIENYVSYPIGSKFENSACEDC 2482
            |.:.|.:......::|::.||       :.....|....||.|.:...||        .:..||.
  Fly  2995 ESNLPLEVESTSTLTTTTVTT-------ITTSSTTTETGNLEPVVVEDVS--------TTVKEDK 3044

  Fly  2483 VCVLGGHKNCKPKKCP--PCLGGKLRPVITSDCFCKCEPCPKHQRLCPSSGDCIPEILWCNGVQD 2545
            |.|       ||...|  .....|:...||:              :..:..|.:||.:    .|.
  Fly  3045 VVV-------KPSTVPEDKTEVSKITETITT--------------VTSNETDTVPEKI----SQK 3084

  Fly  2546 CADDEDASCSDSFTVEPDVSREKNETEVITCPV---PVCPPQMKIRITEKKSRKMSKMFTFSKQV 2607
            .|.:|.|....  .|..|.|....|||....||   |...|.......|                
  Fly  3085 SASEESAKKDP--VVTKDTSSRPAETETSPKPVQKEPTPDPAQNTEFPE---------------- 3131

  Fly  2608 SIVDDGT-------TITKTKFISSKEQILAMPNRELDFQLEEQCDEFTCVPIPSKQVDKNETVTC 2665
            ||..|.|       |.|:...|:.||...|..|:      .||..|.|..|.|..:..|.|.::.
  Fly  3132 SIKKDPTPEPDYKETATEAAQITPKEASPAPTNK------NEQSAEPTSKPEPMPRTAKKEEISE 3190

  Fly  2666 TEPKCPEKYDVELDMSASKVGDCLRYSCVLRPNKDDVCE--------------ISGKSFTTFDGT 2716
            .||.                     ::..|.|..|.:.|              .|.::.||...|
  Fly  3191 IEPP---------------------FTAPLAPFVDQLAETKITEIKTEFKEPVTSSQTITTITTT 3234

  Fly  2717 VFKYGPCSHILARDIHSSSWS--------ISVHQQ-------CSDE------TRKVCH--KVITI 2758
            |....  .|.:..::...|.|        .:||||       .||:      |.::.|  :|:|:
  Fly  3235 VKTVD--EHPIVEEVDEVSKSEKIVDVEEPTVHQQEPIKVNETSDDSTRTEPTNEIVHEERVVTV 3297

  Fly  2759 QD 2760
            ::
  Fly  3298 EE 3299

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmlNP_524060.2 VWD 485..636 CDD:295339
C8 680..754 CDD:285899
TIL 758..811 CDD:280072
VWD 840..1015 CDD:214566
C8 1054..1121 CDD:214843
TIL 1131..1185 CDD:280072
TIL 1245..1298 CDD:280072
VWD 1327..1498 CDD:214566
C8 1535..1609 CDD:214843
Mucin2_WxxW 1751..1837 CDD:290069
TIL 1938..2005 CDD:280072 3/9 (33%)
FA58C 2089..2223 CDD:238014 31/153 (20%)
FA58C 2104..2225 CDD:214572 28/140 (20%)
FA58C <2299..2404 CDD:214572 26/187 (14%)
FA58C <2299..2403 CDD:238014 26/186 (14%)
VWD 2703..2858 CDD:295339 19/95 (20%)
C8 2893..2970 CDD:285899
TIL 2974..3030 CDD:280072
VWD 3035..3198 CDD:295339
C8 3257..3313 CDD:285899
VWC 3397..3451 CDD:302663
GHB_like <3755..3813 CDD:304424
shotNP_725339.1 SAC6 204..>420 CDD:227401
CH 223..327 CDD:306753
SPEC 471..689 CDD:238103
SPEC 690..866 CDD:238103
SH3 885..922 CDD:327375
SPEC 1047..1250 CDD:238103
SPEC 1153..1390 CDD:238103
PLEC <1498..1526 CDD:197605
Plectin 1949..1981 CDD:307019
DNA_pol3_delta2 <2711..3178 CDD:331068 111/564 (20%)
DUF4775 3026..3357 CDD:330579 76/354 (21%)
SMC_N <4904..5566 CDD:330553
SPEC 5304..5513 CDD:238103
SPEC <5658..5787 CDD:321951
SPEC 5793..6007 CDD:238103
SPEC 6011..6220 CDD:238103
SPEC 6118..6330 CDD:238103
PRK09039 <6279..6441 CDD:332967
SPEC 6443..6660 CDD:238103
SPEC 6663..6878 CDD:238103
SPEC 6880..7087 CDD:238103
SPEC 6986..7196 CDD:238103
SPEC 7196..7417 CDD:238103
SPEC 7314..7526 CDD:238103
SPEC 7528..7747 CDD:238103
SPEC 7749..7968 CDD:238103
SPEC 7973..8181 CDD:238103
EF-hand_7 8373..8437 CDD:316058
GAS2 8450..8522 CDD:128539
Herpes_ICP4_C 8550..>8795 CDD:332854
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1216
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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