DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hml and Crim1

DIOPT Version :10

Sequence 1:NP_524060.2 Gene:Hml / 39529 FlyBaseID:FBgn0029167 Length:3843 Species:Drosophila melanogaster
Sequence 2:NP_001162574.1 Gene:Crim1 / 298744 RGDID:1308710 Length:1037 Species:Rattus norvegicus


Alignment Length:1075 Identity:225/1075 - (20%)
Similarity:329/1075 - (30%) Gaps:430/1075 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly  2880 CGDLKC--PREMQAKALQ-LCNIIHHPTFARCHKAVNYKQFLNNYC-----LEAACN----CMMA 2932
            |.:.||  ||......:| :|..        |:.....:   |..|     |..||:    |::.
  Rat    40 CDESKCEEPRSCPGSIVQGVCGC--------CYMCARQR---NESCGGAYGLHGACDRGLRCVIR 93

  Fly  2933 N--NGDP------AACK--------------CNILESFVKKCLSVNPLVQLTTWRAVAQCEINCP 2975
            .  |||.      ..|:              ||  |:.:..|..:|...:.:|.|       .|.
  Rat    94 PPLNGDSITEYEVGVCEDEDWDDDQLLGFEPCN--ENLISGCNIINGRCECSTIR-------TCN 149

  Fly  2976 SPL-----------------VHTDCYKRRCE----PSC--DNV-------HGDDCPVLPDACF-- 3008
            :|.                 ...||.|.|||    |.|  |::       .|:.|| ||..|.  
  Rat   150 NPFEFPRKDMCLSALKRIEEEKPDCTKARCEVQFSPRCPEDSILIEGYAPPGECCP-LPSRCVCD 213

  Fly  3009 -PGC---YCPEGTVR--------KGPNCVPISECK-----DC-----------VCNSLGASKYMT 3045
             .||   .|..|.:.        |...|..:.|||     ||           ||   ....|.|
  Rat   214 PAGCLRKVCQPGYLNILVSKASGKPGECCDLYECKPVFSVDCSTVECPPVQQAVC---PLDSYET 275

  Fly  3046 YDRKSFSFNGNCTYLLSRDVVLPGVHTFQVYVSMDDCK--------KLGQPTPVEGGSCAKSLHI 3102
            ..|  .:.:|.|| |.:|...|.|:..|.|      |:        ..|..||   |.|......
  Rat   276 QVR--LTADGCCT-LPARCECLSGLCAFPV------CEVGSTPRIVSRGDGTP---GKCCDVFEC 328

  Fly  3103 LNGDHVIHVQRVPQKPKSLQVLVDGFEVKKIPYKDSWISLRQVVGKELVLSLPESHVELTASFED 3167
            :|          ..||..:        ...:.|.|.                            |
  Rat   329 VN----------ETKPACV--------FNSVEYYDG----------------------------D 347

  Fly  3168 LIFSLGVPSIKYGSKMEGLCGDCNGNAGNDLQPNPAKKKAGVDVIQSWQADEPKLGLVEECLSED 3232
            :.            :|:. |..|             :.:.||.:..:.|..|      ..|....
  Rat   348 MF------------RMDN-CRFC-------------RCQGGVSICFTAQCGE------LNCERYY 380

  Fly  3233 VPKEHCIPLPPEKDPCLQFYNAELFGKCPLAVDPIAYVSACQQDICKPGNTQQGV--CVALAAYA 3295
            ||:..|.|:.  :||...|.|.   ..|.......|:....::|.|.......|.  |||.|   
  Rat   381 VPEGECCPVC--EDPIYPFNNP---AGCYANGQIRAHGDRWREDDCTFCQCINGEPHCVATA--- 437

  Fly  3296 KECNQHGICTNWRRPQLCPYEC------PSDMVYEP--CGCAKNCDTIKALSEFDAV-------- 3344
              |.|.  |.:   |...|.||      |:.:..:|  ||...||    .|.|.|.|        
  Rat   438 --CGQS--CMH---PVKVPGECCPVCEEPTYITIDPPACGELSNC----TLKEKDCVYGFKLDHN 491

  Fly  3345 ---------------SLKNEAVVH-------TVKTDEMCLSSERFEGC-------FCPPGKVMDG 3380
                           :||....:.       .|...|:|....|.:.|       |||.|.:.:.
  Rat   492 GCRTCQCKNREERCLALKRACTLDCPFGFLTDVHNCELCQCRPRPKKCRPTICDKFCPLGFLRNK 556

  Fly  3381 GQC-------VPEIACTK---------------CD--------------------DGLHLPDEKW 3403
            ..|       .||:.|:|               |.                    ||.|..:|:.
  Rat   557 HGCDICRCKKCPELPCSKVCPLGFQEDSHGCLICKCREVPTSAGPPVLSGTCLSMDGHHHKNEES 621

  Fly  3404 KKDKCTECQCDSKGKTTCVEKKCQVEENICAE-GYRPETIVSVDECCPRYRCV-------PETKD 3460
            ..|.|.||.|.: ||..|....|.|.  .|.. ..||      .:|||  .|.       ||...
  Rat   622 WHDGCRECYCHN-GKEMCALITCPVP--ACGNPTIRP------GQCCP--SCADDFVVQKPELST 675

  Fly  3461 PSKLCLAPLVPICGPGQF--KKEKKDVNGCSQYICECIPKDQCEIIELRELLPGEIIVNVEEGCC 3523
            || :|.||      .|::  :.|..:::.|:|..|.                             
  Rat   676 PS-ICHAP------GGEYFVEGETWNIDSCTQCTCH----------------------------- 704

  Fly  3524 PTQKIECKPETCPKAPVNCQERFYEVKTIKEPGMCCSKHSCVPPKDLCIVQYELDEATKFTKTV- 3587
             :.::.|:.|.||  |:.||          .|..  ::.||.|.   | .:..|..:|...::| 
  Rat   705 -SGRVLCETEVCP--PLLCQ----------NPSR--TQDSCCPQ---C-TEDPLQPSTSHNESVP 750

  Fly  3588 -------GDKWTHAKEVCKQETCSYGPDGNAQVVSTLEQCLTDCAPGFSYQN--LDKTKCCGKCV 3643
                   ||.:. |.|..|.:.|:     :...:.:...|.::..|..:.:.  |.|.:||..|:
  Rat   751 SYCRNDEGDIFL-AAESWKPDVCT-----SCVCMDSSISCYSESCPSVACERPVLRKGQCCPYCL 809

  Fly  3644 QTS------CIFEQKLYEVNALWKSADNCTTYSCLKKDGQFLVTTSREVCPDVGSCLSHLLYQDG 3702
            :.:      |.|..|.|.....| ..|:||...||:  ||.|.:|..  ||.: .|...:..:..
  Rat   810 EDTIPKKVVCHFSGKTYADEERW-DIDSCTHCYCLQ--GQTLCSTVS--CPPL-PCAEPIKVEGS 868

  Fly  3703 CCKRCKSEPLVEDKSSCLPVSLAESRTKEILKFPV 3737
            ||..| .|..|.:.:: :|:.....|.:..|:.|:
  Rat   869 CCPMC-PEMYVPEPTN-VPIEKKNHRGEIDLEVPM 901

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmlNP_524060.2 VWD 485..636 CDD:459671
C8 684..754 CDD:462584
TIL 758..811 CDD:410995
VWD 840..1015 CDD:214566
C8 1054..1121 CDD:214843
TIL 1131..1185 CDD:410995
TIL 1245..1298 CDD:460351
VWD 1327..1498 CDD:214566
C8 1535..1609 CDD:214843
TIL 1938..2005 CDD:473303
FA58C 2089..2223 CDD:238014
FA58C <2299..2403 CDD:238014
VWD 2703..2858 CDD:459671
TIL 2974..3030 CDD:460351 23/99 (23%)
VWD 3035..3198 CDD:459671 28/170 (16%)
C8 3248..3313 CDD:462584 15/66 (23%)
VWC 3397..3451 CDD:450195 17/54 (31%)
GHB_like <3755..3813 CDD:473907
Crim1NP_001162574.1 IGFBP 39..90 CDD:459717 13/60 (22%)
VWC 336..390 CDD:214564 15/121 (12%)
VWC 403..456 CDD:214564 16/62 (26%)
Antistasin 539..564 CDD:460713 6/24 (25%)
Antistasin 567..592 CDD:460713 5/24 (21%)
VWC 612..662 CDD:450195 20/60 (33%)
VWC 683..734 CDD:450195 16/97 (16%)
VWC 758..808 CDD:450195 12/55 (22%)
VWC 819..873 CDD:450195 19/59 (32%)
CRIM1_C 907..1037 CDD:437274
Blue background indicates that the domain is not in the aligned region.

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