DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hml and cutl-23

DIOPT Version :9

Sequence 1:NP_524060.2 Gene:Hml / 39529 FlyBaseID:FBgn0029167 Length:3843 Species:Drosophila melanogaster
Sequence 2:NP_001317785.1 Gene:cutl-23 / 189610 WormBaseID:WBGene00021343 Length:773 Species:Caenorhabditis elegans


Alignment Length:728 Identity:128/728 - (17%)
Similarity:227/728 - (31%) Gaps:296/728 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly  2076 RLIPKIENPAHSLPDSIFNASSQLAPEHGPKMARLTKEQPRGSWSPSINDQMQYLELNFAKPEPF 2140
            |.||.|:..|:...|.:..|:          :|..|:           ::|.....||..|.|  
 Worm   182 REIPNIDIWAYGTGDYVAMAA----------LANYTQ-----------SEQKIVTNLNLQKLE-- 223

  Fly  2141 YGVVMAGSPEFDNYVTLFKILHSHDGIAYHYLVDETEKPQMFNG---PLDSRAPV---------- 2192
                    |:|:.               ||......::|....|   |||....|          
 Worm   224 --------PQFEK---------------YHGTEICEQQPSCVKGSDKPLDLALVVDASESLDHLF 265

  Fly  2193 ---------QTLFKIPIEASSLRIYPLKWHGS--IAMRVELLICGDKEEPKP-VPTVSTILPITE 2245
                     :.|..|.|...::|:..:.:.|.  :..:....:.|:....:. |..:.:|...|.
 Worm   266 SDQKKFLVERVLGNINIHPEAVRVALITYSGQAFVHFKFNSFLYGNNTSVQGFVKNIRSIKGTTA 330

  Fly  2246 RPARLVDLECIDLM-------GVDEG--KMYQDQVQSSSLWQQPNLGKKLQLLELLKLSTPLAWR 2301
            ....|:|  ..||:       ||.||  ||........|.....::.:|::...::.::..:..|
 Worm   331 TNVALMD--AFDLLTSKDPSIGVREGVPKMALVLTDGHSHKSPKDISEKMRAAGIIMIAVSVTPR 393

  Fly  2302 PLANS----------------------QNEFIEF-----DFLE-PRNISGFVTKGGPDGWVTGYK 2338
            ||.:.                      ::||:::     |.:| |.:....| :|..|...|.:.
 Worm   394 PLVDEAELRLIAGSEKRAFTPPNLHDFESEFMKYVGFGCDGIELPPDAKPQV-RGATDVKCTEHS 457

  Fly  2339 -------------VMFSKK---------KPTWNT----VLSTDGQARIFEA----NHDAETERRH 2373
                         ||::..         :.|.|:    :..|:|:..:.:.    .|.      :
 Worm   458 MSIVVRTQRALQGVMYAHMYHDEPECMIRKTDNSREIQMTFTEGKCGLVKTPTADGHG------Y 516

  Fly  2374 HFKNPILTQYIKIVPAYWEKNINMRIEPLGCF----LPYPEIQRQVPVEESKPTKCNICDGVSTS 2434
            ||...::.|:..::....::.::|     .||    :|..|:.|.|               :..:
 Worm   517 HFNITVILQFHPLIITRADQGLDM-----SCFVSSAVPRQELDRAV---------------LKNA 561

  Fly  2435 SSTTGCQCQDQLFWDGNTCVQHNLCP--CIENYVSYPIG-SKFENSACEDCVCVLGGHKNCKPKK 2496
            :.|   ||..:|         |...|  |:.  :...:| :.:...||:.               
 Worm   562 ADT---QCVYRL---------HRYSPGQCVA--LDAKVGETLYHRWACDS--------------- 597

  Fly  2497 CPPCLGGKLRPVITSDCFCK-------------CE------PCPKHQRL---------------- 2526
             ||...     .:..|||.:             ||      ..|.:.|.                
 Worm   598 -PPEYN-----YLVHDCFVQSEKHTQQILDSNGCEVDQHFLETPNYSRFKDYPEDSYVFQEMSVF 656

  Fly  2527 -CPSSGDCI--PEILWCNGVQDCADDEDASCSDSFTVEPDVSREKNETEVITCP--VPVCPPQMK 2586
             .|..||.:  .:|..||     .:|.:|.|:.|  :.|            .||  |||.|.:.|
 Worm   657 KFPGDGDLLFHCKISLCN-----MNDPNAPCNQS--IPP------------KCPKKVPVLPVRQK 702

  Fly  2587 IRIT-------EKKSRKMSKMFTFSKQVS---IVDDGTTITKTKFISSKEQILAMPNRELDFQLE 2641
            ..::       |.:|:::.|..|..|..|   ||:     ||..:..:    |.:..|.|:..|.
 Worm   703 RSVSAEEMASPEWRSKQIRKRQTELKNRSRRQIVE-----TKAGYYMT----LQVETRTLNVLLS 758

  Fly  2642 EQ---------CD 2645
            |.         ||
 Worm   759 ESIRPRDSVKYCD 771

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmlNP_524060.2 VWD 485..636 CDD:295339
C8 680..754 CDD:285899
TIL 758..811 CDD:280072
VWD 840..1015 CDD:214566
C8 1054..1121 CDD:214843
TIL 1131..1185 CDD:280072
TIL 1245..1298 CDD:280072
VWD 1327..1498 CDD:214566
C8 1535..1609 CDD:214843
Mucin2_WxxW 1751..1837 CDD:290069
TIL 1938..2005 CDD:280072
FA58C 2089..2223 CDD:238014 24/157 (15%)
FA58C 2104..2225 CDD:214572 22/144 (15%)
FA58C <2299..2404 CDD:214572 23/162 (14%)
FA58C <2299..2403 CDD:238014 23/161 (14%)
VWD 2703..2858 CDD:295339
C8 2893..2970 CDD:285899
TIL 2974..3030 CDD:280072
VWD 3035..3198 CDD:295339
C8 3257..3313 CDD:285899
VWC 3397..3451 CDD:302663
GHB_like <3755..3813 CDD:304424
cutl-23NP_001317785.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1216
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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