DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hml and F19C6.3

DIOPT Version :9

Sequence 1:NP_524060.2 Gene:Hml / 39529 FlyBaseID:FBgn0029167 Length:3843 Species:Drosophila melanogaster
Sequence 2:NP_509679.1 Gene:F19C6.3 / 184675 WormBaseID:WBGene00008952 Length:429 Species:Caenorhabditis elegans


Alignment Length:391 Identity:78/391 - (19%)
Similarity:110/391 - (28%) Gaps:167/391 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly  3303 ICTNWRRPQLCPY----------ECPSDMV---------------YEPCGCAKNCDTIKALSEFD 3342
            |..||:.|:...:          :|..|.|               |||             |..|
 Worm   145 IVDNWKGPEPTQFLIGSGWPIGQKCKHDGVKKKYADAYTEKIERNYEP-------------SAID 196

  Fly  3343 AVSLKNEAVVHTVKTDEMCLSSERFEGCFCPPGKVMDGGQCVPEIACTKCDDGLHLPDEKWKKDK 3407
            |:   ||....||..              .|||  .||        | |.::.| |...:.|...
 Worm   197 AI---NEIFFETVVQ--------------VPPG--FDG--------C-KINNAL-LNINETKTVN 232

  Fly  3408 CTECQCDSKGKTTCVEKKCQVEENICAEGYRPETIVSVDECCPRYRCVPETKDPSKLCLAPLVPI 3472
            |..|.|..:....|....|...  .|.     ..::..|:|||.                     
 Worm   233 CNTCTCVDRDNVVCQAVDCPAV--TCT-----HPMIRKDDCCPS--------------------- 269

  Fly  3473 CGPGQFKKEKKDVNGCSQ-------YICECIPKDQCEIIELRELLPGEIIVNVEEGCCPTQKIEC 3530
            ||...|.:..|..|...:       |.|:|..|                     :..|.::...|
 Worm   270 CGEQCFYESHKIANPHGEVFWPGDCYRCQCWDK---------------------KVHCSSEYATC 313

  Fly  3531 KPETCPKAPVNCQERFYEVKTIKEPGMCCSKHSCVPPKDLCIVQYELDEATKFTKTVGDK----- 3590
            :|.:||:......|:|          .||.|  |......|.|:.....||......|.|     
 Worm   314 EPPSCPEEDWVYNEKF----------NCCPK--CRDFARFCAVKPCHKYATCTDSKRGPKCSCDT 366

  Fly  3591 -----WTHAKEVCKQETCSYGPDGNAQVVSTLEQCLT-------------DCAPGFSYQNLDKTK 3637
                 .|:.:::   :.||:..|...|    |..||:             ||.||  ||.:.:..
 Worm   367 GFQGNGTYCEDI---DECSFSQDAKEQ----LGGCLSGSTCRNVPGSYKCDCLPG--YQMIGENT 422

  Fly  3638 C 3638
            |
 Worm   423 C 423

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmlNP_524060.2 VWD 485..636 CDD:295339
C8 680..754 CDD:285899
TIL 758..811 CDD:280072
VWD 840..1015 CDD:214566
C8 1054..1121 CDD:214843
TIL 1131..1185 CDD:280072
TIL 1245..1298 CDD:280072
VWD 1327..1498 CDD:214566
C8 1535..1609 CDD:214843
Mucin2_WxxW 1751..1837 CDD:290069
TIL 1938..2005 CDD:280072
FA58C 2089..2223 CDD:238014
FA58C 2104..2225 CDD:214572
FA58C <2299..2404 CDD:214572
FA58C <2299..2403 CDD:238014
VWD 2703..2858 CDD:295339
C8 2893..2970 CDD:285899
TIL 2974..3030 CDD:280072
VWD 3035..3198 CDD:295339
C8 3257..3313 CDD:285899 4/9 (44%)
VWC 3397..3451 CDD:302663 11/53 (21%)
GHB_like <3755..3813 CDD:304424
F19C6.3NP_509679.1 VWC 216..270 CDD:214564 15/83 (18%)
EGF_3 346..375 CDD:289699 5/28 (18%)
EGF_CA 377..416 CDD:214542 11/47 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1216
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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