DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hml and LOC110438378

DIOPT Version :9

Sequence 1:NP_524060.2 Gene:Hml / 39529 FlyBaseID:FBgn0029167 Length:3843 Species:Drosophila melanogaster
Sequence 2:XP_021326300.1 Gene:LOC110438378 / 110438378 -ID:- Length:1322 Species:Danio rerio


Alignment Length:949 Identity:225/949 - (23%)
Similarity:340/949 - (35%) Gaps:232/949 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly  2927 CNCMMANNGDP-----------------AACKCNILESFVKKCLSVNPLVQLTTWRAVAQCEINC 2974
            |.|..||...|                 |.|..|.:....:|     |..|.||          .
Zfish   547 CYCTFANQTFPPESVIYNKTDKAGWCYFAYCNSNCVSEITQK-----PCPQTTT----------I 596

  Fly  2975 PSPLVHTDC----------YKRRC-EPSCDNVHGDDCPVLPDAC---FPGC---YCPEGTVRKGP 3022
            |...|..||          :...| ..:|.|......||..|:.   .|.|   ..|| .|....
Zfish   597 PLSTVPNDCIDVNKKNGESWNEGCTTKNCINGKVTTSPVQCDSADSDIPTCANGLKPE-KVYYNN 660

  Fly  3023 NCVPISECKDCVCNSLGASKYMTYDRKSFSFNGNCTYLLSRDVVLPGVHTFQVYVSMDDCKKLGQ 3087
            .|....|| .|.|:..|...|.|:|...:.|.|.|.|:|.:::: |. :...|:|..:.|:...:
Zfish   661 GCCTKYEC-SCQCSGWGDPHYSTFDGTYYVFQGICDYVLVQEII-PR-YNISVHVKNNYCEATNK 722

  Fly  3088 PTPVEGGSCAKSLHILNGDHVIHVQRVPQKPKSLQVLVDGFEVKKIP-YKDSWISLRQVVGKELV 3151
                  .:|..|:.:....:.|   ::....:.:||.|:  :|.|:| :.:...|: ...|..::
Zfish   723 ------YACQDSVIVKYKGYEI---KLASNTEQIQVSVN--DVVKVPTFLNEDFSI-TTSGMAVI 775

  Fly  3152 LSLPESHVELTASFEDLIFSLGVPSIKYGSKMEGLCGDCNGNAGNDL-QPNPAKKKAGVDVIQSW 3215
            |::.|...|:..|.:.  |.:.:|...:....||.||.|:.:|.||. :|:....::...:...|
Zfish   776 LNIKEIKSEIVVSHQG--FKINLPFSYFKGNTEGQCGVCDNDATNDCRRPDGTIDQSCEQMAALW 838

  Fly  3216 QADEPKLGLVEECLSEDVPKEH-CIPLPPEKDPCLQFYNAELFGKCPLAVDPIAYVSACQQDICK 3279
             ||.|      .|.|   |..| ..|:|.......:...::||..|...|...:|..||:.|:|.
Zfish   839 -ADSP------GCES---PTPHPSEPIPTCTAQVCEVIKSDLFKSCHDIVPYQSYYEACKYDVCY 893

  Fly  3280 PGNTQQGVCVALAAYAKECNQHGICTNWRRPQ----LCPYECPSDMVYEPCG--CAKNCDTIKAL 3338
            ..|... .|.:|.|||:.|....:|.:||...    .|.|.|....||:.||  ..|.|.|    
Zfish   894 KRNDTM-ACASLEAYAQLCGLKSVCVDWRGSDDLNGQCGYNCGDHKVYQACGPKVEKTCST---- 953

  Fly  3339 SEFDAVSLKNEAVVHTVKTDEMCLSS--ERF-EGCFCPPGKVM---DGGQCVPEIACTKCDDGLH 3397
                             :.:||...:  :.| ||||||....:   ...||.|...|...|....
Zfish   954 -----------------RYNEMFADNGDQTFMEGCFCPENTYLLSSTTDQCTPTCDCIGPDGLPR 1001

  Fly  3398 LPDEKWKKDKCTECQCDSKGKTTCVEKKCQVEENICAEGYRPETIVSVDECCPRYRCVPETKDPS 3462
            .|.:.|..: ||..:|.|:......|.....:...|.|||:.    .::.|||  .||.:|.   
Zfish  1002 QPGDSWVVN-CTTYKCSSESFGVVQEPMNCPKIKPCHEGYKS----VIENCCP--TCVCDTS--- 1056

  Fly  3463 KLCLAPLVPICGPGQFKKEKKDVNGCSQYICECIPKDQCEIIELRELLPGEIIVNVEEGCCPTQK 3527
               |.|:.  |..|....|:...:.|..:   |:|||.| :....|..||               
Zfish  1057 ---LCPMK--CDVGYELSEEIPEHHCCPH---CVPKDVC-VHNNTEYQPG--------------- 1097

  Fly  3528 IECKPETCPKAPVNCQERFYEVKTIKEPGMCCSKHSCVPPKDLCIVQYELDEATKFTKTVGDKWT 3592
                                 ||...||.|.|   .|...||     .::||         |:  
Zfish  1098 ---------------------VKIPTEPCMEC---HCHMDKD-----KDMDE---------DR-- 1122

  Fly  3593 HAKEVCKQETCSYGPDGNAQVVSTLEQCLTDCAPGFSYQNLDKTKCCGKCVQTSCIFEQKLYEVN 3657
            |:|               ...|:.:::..|.|:.||.... .:.:|||.|.|.|||:.......:
Zfish  1123 HSK---------------LHTVTCVKKVCTPCSEGFELVE-QEGECCGTCKQKSCIYTAPDNTTH 1171

  Fly  3658 ALW----KSADNCTTYSCLKKDGQFLVTTSREVCPDVG--SCL--SHLLYQDGCCKRCKSEPLVE 3714
            .|.    ||...|.|.:|.:.||.|:....:..|||..  .|.  :.....|||||.||.:    
Zfish  1172 TLQPGEVKSHHKCETLTCREIDGVFVTEKIKPKCPDFNPDDCEAGTERFDDDGCCKICKPK---- 1232

  Fly  3715 DKSSCLPVSLAESRTKEILKFPVQGHGTCVNADPIQGFTDCEGACSSGSKYNTLTDMHEKFCTCC 3779
                   :.:....|..:      ....|.:..||: .|.|.|.|.:.|.|:....:....|:||
Zfish  1233 -------ICIVRKNTTHV------NANDCKSISPIE-VTSCSGHCGTQSMYSMENSIMMHSCSCC 1283

  Fly  3780 SIKSYHPISVKMICDDGHTFTQKHEVPSNCGCSP--CSE 3816
            ..:.:....||:.|.||......:....:|.|:|  |.:
Zfish  1284 REEKFVTRQVKLKCADGREIVHDYVYIESCTCTPTKCGD 1322

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmlNP_524060.2 VWD 485..636 CDD:295339
C8 680..754 CDD:285899
TIL 758..811 CDD:280072
VWD 840..1015 CDD:214566
C8 1054..1121 CDD:214843
TIL 1131..1185 CDD:280072
TIL 1245..1298 CDD:280072
VWD 1327..1498 CDD:214566
C8 1535..1609 CDD:214843
Mucin2_WxxW 1751..1837 CDD:290069
TIL 1938..2005 CDD:280072
FA58C 2089..2223 CDD:238014
FA58C 2104..2225 CDD:214572
FA58C <2299..2404 CDD:214572
FA58C <2299..2403 CDD:238014
VWD 2703..2858 CDD:295339
C8 2893..2970 CDD:285899 13/59 (22%)
TIL 2974..3030 CDD:280072 16/72 (22%)
VWD 3035..3198 CDD:295339 38/163 (23%)
C8 3257..3313 CDD:285899 18/59 (31%)
VWC 3397..3451 CDD:302663 13/53 (25%)
GHB_like <3755..3813 CDD:304424 15/57 (26%)
LOC110438378XP_021326300.1 Endomucin 375..>510 CDD:330316
VWD 662..825 CDD:214566 44/179 (25%)
C8 862..924 CDD:312319 19/62 (31%)
TIL 934..993 CDD:307783 20/79 (25%)
CT 1236..1319 CDD:214482 21/89 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D12226at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.