DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hml and vwc2l

DIOPT Version :10

Sequence 1:NP_524060.2 Gene:Hml / 39529 FlyBaseID:FBgn0029167 Length:3843 Species:Drosophila melanogaster
Sequence 2:XP_073767571.1 Gene:vwc2l / 100148652 ZFINID:ZDB-GENE-081104-169 Length:258 Species:Danio rerio


Alignment Length:244 Identity:54/244 - (22%)
Similarity:85/244 - (34%) Gaps:81/244 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly  1136 VFDEC-GDGCALSCDD-----------LPSKGSCKRECVEG---C---RCP--HGEYVN-EDGEC 1179
            :||:. |.||.   ||           .|...:|...|.|.   |   .||  |.:... |...|
Zfish    44 IFDDYRGKGCV---DDSGFVYKLGERFFPGHSNCPCVCTEDGPVCDQPECPKIHPKCTKVEHNGC 105

  Fly  1180 VPKKMC-----HCNFDGMSFR----------PGYKEVR-PGEKFLDLCTCTDGVWDCQDAEPGDK 1228
            .|:  |     .|.:.|.:::          .|...|. .|..|              .|||   
Zfish   106 CPE--CKEVKNFCEYRGKTYKILEEFKVFHLQGSPAVAVEGSHF--------------TAEP--- 151

  Fly  1229 DKYPPSSELRSK---CAKQPYAEFTKCAPKEPKTCKNMDKYVADSSDCLPGCVCMEGYVYDTSRL 1290
               |.:::|:::   ....| .|:.:|.|.....|     .|||.:  :|.||   ..||:..:.
Zfish   152 ---PATAQLQARGRGYGPSP-CEWCRCEPNNEVHC-----VVADCA--VPECV---NPVYEPEQC 202

  Fly  1291 ACVLPANCSCHHAGKSYDDGEKIK-EDCNLCECRAGNW----KCSKNGC 1334
            ..:.....:|.........|.::| :||.:|.|.:|:|    :|.:..|
Zfish   203 CPICKNGPNCFAGTTIIPAGIEVKVDDCTICRCHSGDWWKPAQCLRREC 251

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmlNP_524060.2 VWD 485..636 CDD:459671
C8 684..754 CDD:462584
TIL 758..811 CDD:410995
VWD 840..1015 CDD:214566
C8 1054..1121 CDD:214843
TIL 1131..1185 CDD:410995 18/69 (26%)
TIL 1245..1298 CDD:460351 13/52 (25%)
VWD 1327..1498 CDD:214566 3/12 (25%)
C8 1535..1609 CDD:214843
TIL 1938..2005 CDD:473303
FA58C 2089..2223 CDD:238014
FA58C <2299..2403 CDD:238014
VWD 2703..2858 CDD:459671
TIL 2974..3030 CDD:460351
VWD 3035..3198 CDD:459671
C8 3248..3313 CDD:462584
VWC 3397..3451 CDD:450195
GHB_like <3755..3813 CDD:473907
vwc2lXP_073767571.1 None
Blue background indicates that the domain is not in the aligned region.

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