DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hml and edil3

DIOPT Version :10

Sequence 1:NP_524060.2 Gene:Hml / 39529 FlyBaseID:FBgn0029167 Length:3843 Species:Drosophila melanogaster
Sequence 2:NP_001093683.1 Gene:edil3 / 100101687 XenbaseID:XB-GENE-853572 Length:482 Species:Xenopus tropicalis


Alignment Length:573 Identity:131/573 - (22%)
Similarity:213/573 - (37%) Gaps:169/573 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly  1880 CQPKGVEGGWIYVEKTCGEYMMFNPTMLICDHIATVTEIKPNCGLKPEPEPEF----EPIKQCPP 1940
            |.|...|.|.|.:.....|       ...|:..|..:::  ||....|.:.|.    ..:..|.|
 Frog    27 CDPNPCENGGICLSGLSDE-------SFSCECPAGFSDL--NCSSVVEVDAEVVENSTTVGPCHP 82

  Fly  1941 GKIKSECANQCENTCHYYGSILKKRGLCQVGE---------------------HCKPGCVDELRP 1984
                        |.||       ..|:|::.|                     ||:.. |:|...
 Frog    83 ------------NPCH-------NGGICEISEAYRGDTFIGYVCKCTHGFNGIHCQHN-VNECEA 127

  Fly  1985 DCPKLGKFWRD---EDTCVHADECPCMDKAEHYVQPHKPVLGEFEVCQCIDNAFTCVPNKPEPVP 2046
            :..|.|....|   ..:|    |||                ||:....|   .:.|         
 Frog   128 EPCKNGGICTDLVANYSC----ECP----------------GEYMGRNC---QYRC--------- 160

  Fly  2047 KDEDDDLDLVSVVPIYPVTLTPPLQCSPERLIPKIENPAHSLPDSIFNASSQLAPEHGPKMARLT 2111
                                :.||... ..:|...:..|.|...::|......     |..|||.
 Frog   161 --------------------SGPLGME-GGIISNQQITASSTHRALFGLQKWY-----PYFARLN 199

  Fly  2112 KEQPRGSWSPSINDQMQYLELNFAKPEPFYGVV-----MAGSPEFDNYVTLFKILHSHDGIAYH- 2170
            |:....:|:.:.||:..::::|..|.....||:     ..||||   |:..:||.:|:||.::. 
 Frog   200 KKGLVNAWTSAENDRWPWIQINLQKKMRVTGVITQGAKRIGSPE---YIKSYKIAYSNDGKSWST 261

  Fly  2171 YLVDETEKPQMFNGPLDSRAPVQTLFKIPIEASSLRIYPLKWHGSIAMRVELLICGDKEEPKPVP 2235
            |.|..|.:..:|.|.:|:..|....|..||||..:|:||........:|:|||.|          
 Frog   262 YKVKRTSEDMVFRGNVDNNTPYANSFTPPIEAQYIRLYPQVCRRHCTLRMELLGC---------- 316

  Fly  2236 TVSTILPITERPARLVDLE-CIDLMGVDEGKMYQDQVQSSSLWQQPNLG------KKLQLLELLK 2293
                            :|. |.:.:|:..|.:...||.:||:::..|:.      :|.:|....|
 Frog   317 ----------------ELSGCSEPLGMKSGHIQDHQVTASSVFRTLNMDMFSWEPRKARLDRQGK 365

  Fly  2294 LSTPLAWRPLANSQNEFIEFDFLEPRNISGFVTKGGPD----GWVTGYKVMFSKKKPTWNTVLST 2354
            ::   ||....:.|:::::.|.|.|..::|.:|:|..|    .:|..|||.:|.....|  .:..
 Frog   366 VN---AWTSGKSDQSQWLQVDLLRPTKVTGIITQGAKDFGHVQFVGSYKVAYSNNGEHW--AVYQ 425

  Fly  2355 DGQAR---IFEANHDAETERRHHFKNPILTQYIKIVPAYWEKNINMRIEPLGC 2404
            ||:.|   :|:.|.|.:|.|::.....|..:||:|:|..|...|.:|.|.|||
 Frog   426 DGKQRKDKVFQGNFDNDTHRKNVMDPAIYARYIRILPWSWYGRITLRAELLGC 478

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmlNP_524060.2 VWD 485..636 CDD:459671
C8 684..754 CDD:462584
TIL 758..811 CDD:410995
VWD 840..1015 CDD:214566
C8 1054..1121 CDD:214843
TIL 1131..1185 CDD:410995
TIL 1245..1298 CDD:460351
VWD 1327..1498 CDD:214566
C8 1535..1609 CDD:214843
TIL 1938..2005 CDD:473303 16/90 (18%)
FA58C 2089..2223 CDD:238014 40/139 (29%)
FA58C <2299..2403 CDD:238014 33/110 (30%)
VWD 2703..2858 CDD:459671
TIL 2974..3030 CDD:460351
VWD 3035..3198 CDD:459671
C8 3248..3313 CDD:462584
VWC 3397..3451 CDD:450195
GHB_like <3755..3813 CDD:473907
edil3NP_001093683.1 FA58C 323..477 CDD:238014 43/158 (27%)
EGF 27..59 CDD:394967 8/40 (20%)
EGF 80..117 CDD:394967 8/55 (15%)
EGF_CA 121..157 CDD:238011 12/59 (20%)
FA58C 162..315 CDD:238014 46/161 (29%)
Blue background indicates that the domain is not in the aligned region.

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