DRSC/TRiP Functional Genomics Resources

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Protein Alignment bru3 and RBP-DR1

DIOPT Version :9

Sequence 1:NP_001369050.1 Gene:bru3 / 39527 FlyBaseID:FBgn0264001 Length:552 Species:Drosophila melanogaster
Sequence 2:NP_567249.1 Gene:RBP-DR1 / 828090 AraportID:AT4G03110 Length:441 Species:Arabidopsis thaliana


Alignment Length:416 Identity:147/416 - (35%)
Similarity:202/416 - (48%) Gaps:101/416 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 NRALQLKPAENESRSEHLDRKLFVGMLSKQQTEDDVRQIFHPFGTIEECTILRGPDGASKGCAFV 86
            |..||:|.|:.|  .|.|:.|||||||.|..:|.:|:.:|..:|||::..||||....||||||:
plant    89 NSLLQVKYADGE--LERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFL 151

  Fly    87 KFGSQQEAQSAITNLHGSQTMPGASSSLVVKYADTEKERQIRRMQQMAGHMNLL------NPFVF 145
            |:.::::|.||:.:::|...|.|::..||||:||||:||..||:|:...|:..|      ||.:|
plant   152 KYETKEQAVSAMESINGKHKMEGSTVPLVVKWADTERERHTRRLQKAQSHIARLGNGDPTNPSLF 216

  Fly   146 NQF-----SPYGAYAQQQQQAALMAAAATAPGSAAAYMNP----MAALATQIPHGLNGTGQPPSL 201
            ...     .||..|...|            |.....||.|    .||.:..|       .||   
plant   217 GALPMGYVPPYNGYGYHQ------------PPGTYGYMLPPIQNQAAFSNMI-------AQP--- 259

  Fly   202 PSPTMPNFNMGANTPNGQPGGAAAAAAAAAAADGVFTNGIPQTAFPGHPLHLTIPPQGLPNGDAA 266
                    |.|.|.           |....:.|                   ::||:        
plant   260 --------NQGNNN-----------ALQGTSPD-------------------SVPPR-------- 278

  Fly   267 TLQHAFPGLPP--FPGVAFPAVYGQ-FPQALPPPLAAVAPTQREDFLMFPGCS------------ 316
            ..:..|| :||  :.|..:||:.|. ||.|.|..:.:..|.......:.||.|            
plant   279 LARRNFP-MPPGNYMGSGYPAMRGHPFPFAYPRGIVSPRPLSSSPGSISPGMSTPLGIGLSSVVQ 342

  Fly   317 ISGPEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFIDRATNQSKCFGFVSFDNPASAQAAI 381
            ..||||.|||||::|:||||.||...|..||.|:|:|||:|:||..||||||||:|:.|:||.||
plant   343 TEGPEGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAI 407

  Fly   382 QAMNGFQIGMKRLKVQLKRPKDASRP 407
            ..|||..:|.|:|||||||..:..:|
plant   408 DMMNGRHLGGKKLKVQLKRDSNNGQP 433

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bru3NP_001369050.1 RRM2_CELF3_4_5_6 40..120 CDD:410043 35/79 (44%)
ELAV_HUD_SF 43..404 CDD:273741 137/390 (35%)
RRM3_CELF3_4_5_6 319..397 CDD:241083 48/77 (62%)
RBP-DR1NP_567249.1 RRM1_2_CELF1-6_like 19..95 CDD:409796 3/5 (60%)
RRM1_2_CELF1-6_like 107..182 CDD:409796 33/74 (45%)
U2AF_lg <231..>423 CDD:273727 81/260 (31%)
RRM3_CELF1-6 351..423 CDD:409797 43/71 (61%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 95 1.000 Domainoid score I2491
eggNOG 1 0.900 - - E1_KOG0144
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H75172
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54704
OrthoDB 1 1.010 - - D1209165at2759
OrthoFinder 1 1.000 - - FOG0000286
OrthoInspector 1 1.000 - - otm3487
orthoMCL 1 0.900 - - OOG6_100683
Panther 1 1.100 - - O PTHR24012
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X208
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1211.830

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