Protein Alignment bru3 and FCA

DIOPT Version :9

• Sequence 1: NP_001369050.1
• Gene: bru3 / 39527
• FlyBaseID: FBgn0264001
• Length: 552
• Species: Drosophila melanogaster
• Sequence 2: NP_001319956.1
• Gene: FCA / 827323
• AraportID: AT4G16280
• Length: 747
• Species: Arabidopsis thaliana
• Alignment Length: 663
• Identity: 156/663 - (23%)
• Similarity: 231/663 - (34%)
• Gaps: 227/663 - (34%)

  Fly    18 QVTM---NRALQLKPAENE-SRSEHLDRKLFVGMLSKQQTEDDVRQIFHPFGTIEECTILRGPDG 78
            |:|:   ...:|::.|:.| .|...|:.|||||.|:||.||.:|.:||..||.:|:..::|....
plant   184 QITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR 248

  Fly    79 ASKGCAFVKFGSQQEAQSAITNLHGSQTMPGASSSLVVKYADTEKER--QIRRMQQMAG------ 135
            .|:||.|||:.|::.|.:||..|:|:.||.|.:..|:|::|:.::.:  :.|.|....|
plant   249 QSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGESREMAPPVGLGSGPR 313

  Fly   136 --------------------HMNLLNPFVFNQFSPYGAYAQQQQQAALMAAAATAPGSAAAYMNP 180
                                |.|...|.......|               .:.|....|.:..:|
plant   314 FQASGPRPTSNFGDSSGDVSHTNPWRPATSRNVGP---------------PSNTGIRGAGSDFSP 363

  Fly   181 MAALATQIPHG----LNGTGQPPSLPSPTMPNFNMGANTPNGQPG-GAAAAAAAAAAADGVFTNG 240
            ....|| :|..    |.|.|.||..|.|.              || .::|.......|.|.....
plant   364 KPGQAT-LPSNQGGPLGGYGVPPLNPLPV--------------PGVSSSATLQQQNRAAGQHITP 413

  Fly   241 IPQTAFPGHPLHLTIPPQGLPNGDAATLQHAFPGLPP--FPGVAFP-----AVYGQFPQALPPP- 297
            :.:      |||   .|||||          .|..|.  |||...|     |...|.|.:..||
plant   414 LKK------PLH---SPQGLP----------LPLRPQTNFPGAQAPLQNPYAYSSQLPTSQLPPQ 459

  Fly   298 ---LAAVAP-----------TQREDFLMFPGCSISGPEGCNLFIYHLPQEFGDAELMQMFLPFGN 348
               ..|.||           |.....:.||..|...|   ...:.|.|     :||.|:
plant   460 QNISRATAPQTPLNINLRPTTVSSATVQFPPRSQQQP---LQKMQHPP-----SELAQL------ 510

  Fly   349 VISSKVFIDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDASRPYXQSEF 413
             :|.:....:||.||            |.||         |...:.:||..:..:.:.|..|:.
plant   511 -LSQQTQSLQATFQS------------SQQA---------ISQLQQQVQSMQQPNQNLPLSQNG- 552

  Fly   414 LKRNSQQPTGA----TTSATGALPTTTAFSAATPTS-AVTSVSATVTTTA-------HYNNL-GS 465
             :...||..|:    ..|.||:.|.:...:||...| :|.||..|.|...       :||.| |.
plant   553 -RAGKQQWAGSAIPRVASTTGSTPVSYVQTAAPAVSQSVGSVKCTWTEHTSPDGFKYYYNGLTGE 616

  Fly   466 S----------------------FRPTL--------PL-------------------------PT 475
            |                      .:||:        ||                         ||
plant   617 SKWEKPEEMIVFEREQQKQQQHQEKPTIQQSQTQLQPLQQQPQQVQQQYQGQQLQQPFYSSLYPT 681

  Fly   476 ESSNHNAHIPYTFASWRSGTYCYRNHNNNSENYSDNNNNHRNVP-DSQSQNDTSSNTNCSKVELV 539
            ..::||...| :....::..:.......|:::|:     ..::| .:.|.||. |.|..|:....
plant   682 PGASHNTQYP-SLPVGQNSQFPMSGIGQNAQDYA-----RTHIPVGAASMNDI-SRTQQSRQSPQ 739

  Fly   540 ERLFMWQQQKRKA 552
            |  .||   |.||
plant   740 E--LMW---KNKA 747

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
bru3	NP_001369050.1	RRM2_CELF3_4_5_6	40..120	CDD:410043	34/79 (43%)
		ELAV_HUD_SF	43..404	CDD:273741	102/415 (25%)
		RRM3_CELF3_4_5_6	319..397	CDD:241083	15/77 (19%)
FCA	NP_001319956.1	LSM_int_assoc	<121..497	CDD:330438	94/364 (26%)
		RRM1_FCA	121..200	CDD:241077	3/15 (20%)
		RRM2_FCA	212..291	CDD:241081	35/78 (45%)
		WW	597..624	CDD:238122	6/26 (23%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	1	1.000	62	1.000	Domainoid score	I3741
eggNOG	1	0.900	-	-		E1_KOG0144
Hieranoid	1	1.000	-	-
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1209165at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	1	0.900	-	-		OOG6_100683
Panther	1	1.100	-	-	O	PTHR24012
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	8	7.820