Protein Alignment bru3 and shep

DIOPT Version :10

• Sequence 1: NP_001369050.1
• Gene: bru3 / 39527
• FlyBaseID: FBgn0264001
• Length: 552
• Species: Drosophila melanogaster
• Sequence 2: NP_001246636.1
• Gene: shep / 38605
• FlyBaseID: FBgn0052423
• Length: 590
• Species: Drosophila melanogaster
• Alignment Length: 360
• Identity: 86/360 - (23%)
• Similarity: 135/360 - (37%)
• Gaps: 95/360 - (26%)

  Fly   117 KYADTEKERQIRRM-----QQM----AGHMNLLNPFVFNQFSPYGAYAQQQQQAALMAAAATAPG 172
            :|:.....:|.::|     ||.    .|.:::..|....|..|....:|.....:..:|||....
  Fly     4 RYSPAPPPQQQQQMGGPPHQQQGGGGGGGVSMRGPSNAQQLPPQIPRSQNYSNGSSSSAAAAPLT 68

  Fly   173 SAAAYMN-PMAALATQIPHGLNGTGQPPSLPSPT-----------MPNFNMGANTPNG-QPGGAA 224
            |.:|:.. |:.|.|..:...|  ..:||::.||.           .|.....:.||.| .|..||
  Fly    69 SRSAFPGAPLTASAVALKGAL--PQRPPAMTSPAAAAAGAALAAGAPYRGAASWTPQGYAPAAAA 131

  Fly   225 AAAAAAAAADGVFTNGIPQTAFPGHPLHLTIPPQGLPNGDAATLQHAFPGLPPFPGVAFPAVYGQ 289
            ||||.|..|...:|..:||.|:..:..|....|        ||...:|        ::.|..|..
  Fly   132 AAAAVAQQAAYRYTAPLPQPAYAAYTPHTATTP--------ATTTVSF--------LSQPVDYYW 180

  Fly   290 FPQALPPPLAAVAPTQREDFLMFPGCSIS-----------------GPEG--------------- 322
            :.|.:|   .|.:|:...........|.|                 ||.|
  Fly   181 YGQRVP---TAASPSNTNSSSSSNTGSQSGTLSTSLSNTTNTNTNMGPNGTVQNQNQQGGEQLSK 242

  Fly   323 CNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFIDRATNQSKCFGFVSFDNPASAQAAIQAMNGF 387
            .||:|..|.|...|.:|:.|...:|.:||:|..:|:.||:.|.:|||.|:.||.|:.|::.:.|.
  Fly   243 TNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQGK 307

  Fly   388 QIGMKRLKVQLKRPKDASRPYXQSEFLKRNSQQPT 422
            .:                    |::..|:..|.||
  Fly   308 GV--------------------QAQMAKQQEQDPT 322

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
bru3	NP_001369050.1	RRM2_CELF3_4_5_6	40..120	CDD:410043	1/2 (50%)
		ELAV_HUD_SF	43..404	CDD:273741	81/340 (24%)
		RRM3_CELF3_4_5_6	319..397	CDD:241083	28/92 (30%)
shep	NP_001246636.1	RRM_SF	240..321	CDD:473069	28/100 (28%)
		RRM2_MSSP	322..400	CDD:409690	1/1 (100%)