DRSC/TRiP Functional Genomics Resources

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Protein Alignment bru3 and Pof

DIOPT Version :10

Sequence 1:NP_001369050.1 Gene:bru3 / 39527 FlyBaseID:FBgn0264001 Length:552 Species:Drosophila melanogaster
Sequence 2:NP_523851.1 Gene:Pof / 37947 FlyBaseID:FBgn0035047 Length:495 Species:Drosophila melanogaster


Alignment Length:116 Identity:30/116 - (25%)
Similarity:48/116 - (41%) Gaps:26/116 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 QLKPAENESRSEHLDR-KLFVGMLSKQQTEDDVRQIFHPFGTIEECTILRGPDGASK-----GCA 84
            :|||..:|.::|.:|. .|:||.:....|...::..|        ...:|...|..|     ..|
  Fly   199 ELKPFSDEEQAEFIDPCSLYVGNIPFNMTTSAIKAYF--------ANAMRVDIGVLKREKRARYA 255

  Fly    85 FVKFGSQQEAQSAITNLHGSQTMPGASSSLVVKYADTEKERQIRRMQQMAG 135
            ||::.|..:...|...|..|   |..|.:|.|:|         ||:::.||
  Fly   256 FVRYASPDQTMEAFKELVDS---PLNSRTLTVRY---------RRLRKRAG 294

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bru3NP_001369050.1 RRM2_CELF3_4_5_6 40..120 CDD:410043 21/85 (25%)
ELAV_HUD_SF 43..404 CDD:273741 24/98 (24%)
RRM3_CELF3_4_5_6 319..397 CDD:241083
PofNP_523851.1 RRM_SF 217..285 CDD:409669 18/78 (23%)
Blue background indicates that the domain is not in the aligned region.

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