DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bru3 and Sxl

DIOPT Version :9

Sequence 1:NP_001369050.1 Gene:bru3 / 39527 FlyBaseID:FBgn0264001 Length:552 Species:Drosophila melanogaster
Sequence 2:NP_001259303.1 Gene:Sxl / 3772180 FlyBaseID:FBgn0264270 Length:722 Species:Drosophila melanogaster


Alignment Length:592 Identity:123/592 - (20%)
Similarity:203/592 - (34%) Gaps:191/592 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 GQPKVEFAQQVTMNRAL-----------QLKPAENESRSEHL-DRKLFVGMLSKQQTEDDVRQIF 61
            |...|:|..::...||:           :||.:......|.: |..|:|..|.:..|:|.:..||
  Fly   159 GYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIF 223

  Fly    62 HPFGTIEECTILRGP-DGASKGCAFVKFGSQQEAQSAITNLHGSQTMP-GASSSLVVKYADTEKE 124
            ..:|:|.:..|||.. .|..:|.|||::..::|||.||:.|  :..:| |.|..|.|:.|:..  
  Fly   224 GKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL--NNVIPEGGSQPLSVRLAEEH-- 284

  Fly   125 RQIRRMQQMAGHMNLLNPFVFNQFSPYGAYAQQQQQAALMAAAATAPGSAAAYMNPMAALATQIP 189
                                                         ....||.:|:.|..:...:|
  Fly   285 ---------------------------------------------GKAKAAHFMSQMGVVPANVP 304

  Fly   190 HGLNGTGQPPSLPSPTMPNFNMGANTPNGQPGGAAAAAAAA--AAADGVFTNGIPQTAFPG---- 248
                        |.|..|..:|.|........||.....:.  |..|.:|  |:....|..    
  Fly   305 ------------PPPPQPPAHMAAAFNMMHRDGAMEKLRSLFDAICDAIF--GLDSENFADLLDG 355

  Fly   249 ------HPLHLTIPPQGLPNGDAATLQHAFPGLPPFPGVAFPAVYGQFPQALPPPLAAVAPTQRE 307
                  |..:| :.||    .....|||.                   .|||             
  Fly   356 LYRRKYHYPYLXLTPQ----QQQQLLQHQ-------------------QQAL------------- 384

  Fly   308 DFLMFPGCSISGPEG--CNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFIDRATNQSKCFGFVS 370
            .|......||....|  .|:.:||  |::...:..|..|  |||.:..:..:.:.|........:
  Fly   385 GFTSSSNNSIGNGNGNDNNMLLYH--QQYHQQQTQQQRL--GNVAAHNISPNGSNNNINTSNTNN 445

  Fly   371 FDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD------------ASRPYXQ------------- 410
            .:.....|..:.|::..|     .::||::|:|            :|.|:.|             
  Fly   446 INFNTIRQNGVAALHYLQ-----EQLQLQQPQDQQSQQQQPLTMPSSPPFQQQSRQSHHNGSSST 505

  Fly   411 ----------SEFLKRNSQQPTGATTSATGALPTTTAFSAATPTSAVTSVSATVTTTAHYNNLGS 465
                      :.....||.|    :.|.||.....:||::....|. ::.....|::.::.|..:
  Fly   506 LGNQLLAISNNNSFNNNSNQ----SNSFTGNYSNGSAFTSNGAISG-SNFPNNPTSSGNFTNNST 565

  Fly   466 SFRPTLPLPTESSNHNAHIPYTFASWRSGTYCYRNHNNNSENYSDNNNNHRNVPDSQS--QNDTS 528
            :..||      :|.|       |||..:|:..:.||.:.|.||:::|.|..:...|.|  .|:.:
  Fly   566 NSNPT------NSGH-------FASNLAGSSNFTNHLSGSNNYTNSNGNFTSNAASSSNFSNNAA 617

  Fly   529 SNTNCSK 535
            |:||.||
  Fly   618 SSTNYSK 624

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bru3NP_001369050.1 RRM2_CELF3_4_5_6 40..120 CDD:410043 29/81 (36%)
ELAV_HUD_SF 43..404 CDD:273741 77/388 (20%)
RRM3_CELF3_4_5_6 319..397 CDD:241083 14/79 (18%)
SxlNP_001259303.1 RRM1_SXL 117..197 CDD:241093 7/37 (19%)
RRM2_Hu_like 203..281 CDD:240822 28/79 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24012
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.