Protein Alignment bru3 and pAbp

DIOPT Version :10

• Sequence 1: NP_001369050.1
• Gene: bru3 / 39527
• FlyBaseID: FBgn0264001
• Length: 552
• Species: Drosophila melanogaster
• Sequence 2: NP_476667.1
• Gene: pAbp / 37070
• FlyBaseID: FBgn0265297
• Length: 634
• Species: Drosophila melanogaster
• Alignment Length: 610
• Identity: 117/610 - (19%)
• Similarity: 182/610 - (29%)
• Gaps: 211/610 - (34%)

  Fly     8 VGQPKVEFAQQVTMNRALQL--------KPAEN--ESRSEHLDR----KLFVGMLSKQQTEDDVR 58
            :|...|.|.|.....|||..        ||...  ..|...|.|    .:|:..|.:......:.
  Fly    43 LGYAYVNFQQPADAERALDTMNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIY 107

  Fly    59 QIFHPFGTIEECTILRGPDGASKGCAFVKFGSQQEAQSAITNLHGSQTMPGASSSLVVKYAD-TE 122
            ..|..||.|..|.:.....|.|||..||.|.:::.|.::|..::|  .:.......|.|:.. .|
  Fly   108 DTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNG--MLLNGKKVYVGKFIPRKE 170

  Fly   123 KERQIRRMQQMAGHMNLLNPFVFNQ----------FSPYGAYAQQQQQA---------ALMAAAA 168
            :|:::....::..::.:.|   |.:          |.|||.....:..:         ..:|...
  Fly   171 REKELGEKAKLFTNVYVKN---FTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFET 232

  Fly   169 TAPGSAAAYMNPMAALATQIPHGLNGTGQPPSLPSPTMPNFNMGANTPNGQPGGAAAAAAAAAAA 233
            |....||.             ..|||.              :||       .|.:...|.|...|
  Fly   233 TEAAEAAV-------------QALNGK--------------DMG-------EGKSLYVARAQKKA 263

  Fly   234 DGVFTNGIPQTAFPGHPLHLTIPPQGLPNGDAATLQHAFPGLPPFPGVAFPAVYGQFPQALPPPL 298
            :                             ....|:..|..|
  Fly   264 E-----------------------------RQQELKRKFEEL----------------------- 276

  Fly   299 AAVAPTQREDFLMFPGCSISGPEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFIDRATNQS 363
                 .|:....:|         |.||::.:|.....|..|...|.|:||:.|:||..|. ..:|
  Fly   277 -----KQKRHESVF---------GVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDE-EGRS 326

  Fly   364 KCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDASRPYXQSEFLKR----NSQQ---- 420
            |.||||.|:..:.|..|:..:||..:|.|.|.|.|.:.|:..:.:..|::::.    ..||
  Fly   327 KGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMRHMTGMRMQQLGQI 391

  Fly   421 -----------PT------------------------------------------GATTSATGAL 432
                       ||                                          |......||:
  Fly   392 YQPNAASGFFVPTLPSNQRFFGSQVATQMRNTPRWVPQVRPPAAIQGVQAGAAAAGGFQGTAGAV 456

  Fly   433 PTTTAFSAATPTSAVTSVSATVTTTAHYNNLGSSFRPTLPLPTESSNHNAHIPYTFASWRSGTYC 497
            ||....:||....|...|..|....|..||:.::....: ...:::..|..||        |...
  Fly   457 PTQFRSAAAGARGAQPQVQGTHAAAAAANNMRNTGARAI-TGQQTAAPNMQIP--------GAQI 512

  Fly   498 YRNHNNNSENYSDNNNNHRNVPDSQ 522
            .......:.||. ..:|.||.|..|
  Fly   513 AGGAQQRTSNYK-YTSNMRNPPVPQ 536

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
bru3	NP_001369050.1	RRM2_CELF3_4_5_6	40..120	CDD:410043	20/83 (24%)
		ELAV_HUD_SF	43..404	CDD:273741	76/380 (20%)
		RRM3_CELF3_4_5_6	319..397	CDD:241083	28/77 (36%)
pAbp	NP_476667.1	PABP-1234	2..625	CDD:130689	117/610 (19%)