DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bru3 and ssx

DIOPT Version :10

Sequence 1:NP_001369050.1 Gene:bru3 / 39527 FlyBaseID:FBgn0264001 Length:552 Species:Drosophila melanogaster
Sequence 2:NP_569908.1 Gene:ssx / 31086 FlyBaseID:FBgn0024987 Length:485 Species:Drosophila melanogaster


Alignment Length:269 Identity:67/269 - (24%)
Similarity:99/269 - (36%) Gaps:74/269 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   324 NLFIYHLPQEFGDAELMQMFLPFGNVISSKVFIDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQ 388
            ||.|.:|||:..|.||..:|...|.:.:.|:..|..|..|..:|||.:...:.::.|||.:|||.
  Fly    94 NLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKLNGFY 158

  Fly   389 IGMKRLKVQLKRP-----KDAS-------------------RPY---XQSEFLK-RNSQQPTGA- 424
            :..|||||...||     ||.:                   .||   .|...|: :.:.:|.|. 
  Fly   159 VRNKRLKVSYARPGGQSIKDTNLYVINLSRNINDDMLDRIFSPYGLIVQRNILRDKLTGRPRGVA 223

  Fly   425 ---------TTSATGALPTTTAFSAATPTSAVTSVSATVTTTAHY-------NNLGSSFRPTL-- 471
                     ...|..||..|.....:.|.....:........|.:       |..|....|.:  
  Fly   224 FVRYNKREEAQEAIKALNNTVPEGGSQPIWVRLAEEHGKAKAAQFMAQIGGGNGGGGGGPPHMGP 288

  Fly   472 --PL--PTESSNH---NAHIPYTFASWRSGTYCYR-----------------NHNNNSEN---YS 509
              |:  |...:||   |.|.|:.........:.::                 |||||..|   ::
  Fly   289 GGPMHPPHHHNNHHHNNHHNPHMPPHHHQPQHPHQHPQHHPQLHHMQHHHPNNHNNNHPNNHHHN 353

  Fly   510 DNNNNHRNV 518
            :|||||.|:
  Fly   354 NNNNNHHNM 362

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bru3NP_001369050.1 RRM2_CELF3_4_5_6 40..120 CDD:410043
ELAV_HUD_SF 43..404 CDD:273741 32/84 (38%)
RRM3_CELF3_4_5_6 319..397 CDD:241083 28/72 (39%)
ssxNP_569908.1 sex-lethal <76..272 CDD:273740 45/177 (25%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.