DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bru3 and celf2

DIOPT Version :9

Sequence 1:NP_001369050.1 Gene:bru3 / 39527 FlyBaseID:FBgn0264001 Length:552 Species:Drosophila melanogaster
Sequence 2:XP_012813883.1 Gene:celf2 / 100125022 XenbaseID:XB-GENE-963640 Length:559 Species:Xenopus tropicalis


Alignment Length:458 Identity:192/458 - (41%)
Similarity:245/458 - (53%) Gaps:109/458 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 MNRALQLKPAENESRSEHLDRKLFVGMLSKQQTEDDVRQIFHPFGTIEECTILRGPDGASKG--- 82
            |:..:|:|||::|..:...|||||:||:||:..|:|:|.:|.|||.||||.|||||||.|:.   
 Frog   141 MHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRASQH 205

  Fly    83 -CAFVKFGSQQEAQSAITNLHGSQTMPGASSSLVVKYADTEKERQIRRM-QQMAGHMNLLNPFVF 145
             ||||.|.::..||:||..:|.||||.|.||.:|||:|||:|:::.||: ||:|..|..||...:
 Frog   206 CCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATW 270

  Fly   146 NQFSPYGAYAQQ--------------------QQQAALMA------------------------- 165
            ...:..||...|                    ||.|.:.|                         
 Frog   271 GNLTGLGALTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATTTNA 335

  Fly   166 -----------------AAATAPGSAAAYMNPMAALATQIPHGLNGTGQPPSLPSPTMPNFNMGA 213
                             ||:||..||.|.||.:.:|.|.  .||.|.       :..:.|.|..|
 Frog   336 NPLSTTTSALGALTSPVAASTANSSAGAAMNSLTSLGTL--QGLAGA-------TVGLNNINALA 391

  Fly   214 NTPNGQPGGAAAAAAAAAAADGVFTNGIPQTAFPGHPLHLTIPPQGLPNGDAAT---LQHAFPGL 275
            .|.|     .|...:..||.:|    |:..|              ||.||.|.|   |..|:.|:
 Frog   392 GTVN-----IAQMLSGMAALNG----GLGAT--------------GLTNGTAGTMDALTQAYSGI 433

  Fly   276 PPFPGVAFPAVYGQFPQALPPPLAAVAPTQREDFLMFPGCSISGPEGCNLFIYHLPQEFGDAELM 340
            ..:...|.|.:|.   |:|....:| |.:|:|..|..   |..||||.|||||||||||||.:::
 Frog   434 QQYAAAALPTLYS---QSLLQQQSA-AGSQKEGLLFI---SSQGPEGANLFIYHLPQEFGDQDIL 491

  Fly   341 QMFLPFGNVISSKVFIDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDAS 405
            |||:|||||||:|||||:.||.||||||||:|||.|||||||||||||||||||||||||.|:.|
 Frog   492 QMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDS 556

  Fly   406 RPY 408
            :||
 Frog   557 KPY 559

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bru3NP_001369050.1 RRM2_CELF3_4_5_6 40..120 CDD:410043 48/83 (58%)
ELAV_HUD_SF 43..404 CDD:273741 180/430 (42%)
RRM3_CELF3_4_5_6 319..397 CDD:241083 65/77 (84%)
celf2XP_012813883.1 RRM1_CELF1_2_Bruno 68..151 CDD:241075 4/9 (44%)
ELAV_HUD_SF 71..554 CDD:273741 188/451 (42%)
RRM2_CELF1_2 160..244 CDD:241078 48/83 (58%)
RRM3_CELF1_2 469..558 CDD:241082 72/88 (82%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54704
OrthoDB 1 1.010 - - D1209165at2759
OrthoFinder 1 1.000 - - FOG0000286
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X208
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.930

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