DRSC/TRiP Functional Genomics Resources

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Protein Alignment Liprin-beta and kaznb

DIOPT Version :9

Sequence 1:NP_001261806.1 Gene:Liprin-beta / 39524 FlyBaseID:FBgn0036376 Length:680 Species:Drosophila melanogaster
Sequence 2:XP_017213738.1 Gene:kaznb / 790937 ZFINID:ZDB-GENE-061215-31 Length:860 Species:Danio rerio


Alignment Length:781 Identity:189/781 - (24%)
Similarity:315/781 - (40%) Gaps:196/781 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 AEGS--KMLE---AALQQMDGLISSTATQAGSVSISGAGSSLTLSERNL--ISATN--------- 53
            |:|.  ||:|   ...|::||     |.|:.|..::...|.|:.:.|.|  :.|.|         
Zfish    77 AQGKILKMMEDNKQLAQRIDG-----AIQSASQEVTNLRSELSATSRRLAELGACNPIGLENNQQ 136

  Fly    54 ---------------VLSTAKTLALALQ-QVGLAA----PAPD-PVTAAIISDWL-----ETHIP 92
                           |....||:...|. |.|:::    ..|| .:...::.:.:     |.|:.
Zfish   137 NHHHHHHHHHLHDPSVHHRQKTVVSDLTFQTGMSSLMDFGTPDSTLDKVLLREEVAQLQEEVHLL 201

  Fly    93 RQDSD----------------------------ERMRRLQRDKEGLALQYQMLAER---VSEQAD 126
            ||..|                            |:.:.|:|.||  ||| .|..:|   .:|:||
Zfish   202 RQMKDMLSKDLEDSHGGCSADTLSAAELKVQLGEKEQELERAKE--ALQ-AMKGDRKRLKAEKAD 263

  Fly   127 KIIELEGLITEKSQQLCTKEEQL--------QRQMISSSA----------LETQKLELM------ 167
            .:.:::.|.|    .|.::||||        |.:..|..|          ||.:|.:|.      
Zfish   264 LVNQMQQLYT----TLESREEQLRDFIRNYDQHRKESEDAVKALAKEKDMLEREKWDLRRQTKEA 324

  Fly   168 ---------------SALSELKLHRTALEQA-----NDGGSAISANIPYGSLSNINQKAFMGSPK 212
                           :.:.||:...|..:|:     .|.....|..:|...:.|.:|:..|.:..
Zfish   325 TEQATVLRSQIDMKENRVKELEAELTMAKQSLATLTKDVPKRHSLAMPSEPVVNGSQEWVMQADL 389

  Fly   213 TPPSALRHQIKPQFHSLPRSHGKFVNNNNNRALDVNANSSGKQRNVAFASNEHILIDDNHHQAED 277
            ...:|:|...:..:||.|.        :...||.::...|.:...::.||            |.|
Zfish   390 PLTAAIRQSQQTLYHSHPA--------DRQAALRISPCHSRQPSIISDAS------------AAD 434

  Fly   278 AMTSSFMSQFTPSPKLRERS-ARGLRNILGKLRRSNSSNCELTALEQAEPEFRRGGA--RATAGG 339
            ...||..|... ||:.|..| ...:.::..:.|:.......|.:|.:.   |.||.:  ::...|
Zfish   435 GDRSSTPSDIN-SPRHRTHSLCNSMEDLEDQKRKKKKEKMSLGSLSRV---FARGKSQRKSLDPG 495

  Fly   340 RIE----WSAQT-PLFGENE--------------KHWTTWGAQEVCNWL-AYMGLGCYEDNCRKW 384
            ..:    .|:|| |...:.|              :..:.|.|..|..|| ..|.:..|...|.. 
Zfish   496 LFDDSDSVSSQTQPSLSDGEDQLERLQQAELTRSRPMSLWRAGTVQAWLEVVMAMPMYMRACSD- 559

  Fly   385 LNANPSVSFFTASPVDIERELNLKMPLHRKKILLAIDDLTGKEFDDLTLKASSLDVTWVLR-WLD 448
             |..........|..|:|..|.:..|:||:|:.|||:|....|......||:.:|..||.: ||.
Zfish   560 -NVKSGKVLLGLSDEDLELGLGINSPMHRRKLRLAIEDYREAENGRGLSKAADMDHHWVSKSWLS 623

  Fly   449 DIGLPQYKDYFMQAKIDGRMLHRLTLEDLSQL-HVSSCLHIASLRAGILCMRRLSWNAEGLIRRS 512
            |:|||||...|....:|||:|:.:|..||..: ::::..|:.|:.:.|..::.|:::.|.:..|.
Zfish   624 DVGLPQYSQVFHNQLVDGRVLNSITRRDLETVFNITNKFHVTSILSAIQLLQMLNFDKESIQARR 688

  Fly   513 IKVVSEDEAAATPDRDNVELWTAHRIMGWLQTIDLSEYTPNLRGAGVHGALMLYEPRFNADLLAD 577
            .:..:.       |.|.| :||:||::.|::.|||.||..||:.:|:|||:|:.:|.|:||.:|.
Zfish   689 TQCENR-------DLDPV-VWTSHRVIKWIRDIDLKEYADNLQNSGIHGAVMVLDPTFSADSMAK 745

  Fly   578 LLSIPPSKSLLRRHLAMHFKELVGRPVILSKRD--AESAPGYQPLSITAKLKPVKRTQFSLKRRK 640
            .|.||.:|.::.|||....|.|:........:|  .|..|.:.|.|      ..::|:.....||
Zfish   746 ALDIPNNKHMIHRHLYEEMKVLLNPARTNQAQDYRKEGTPTHSPSS------NCRKTEEGFSPRK 804

  Fly   641 S 641
            :
Zfish   805 N 805

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Liprin-betaNP_001261806.1 SAM_liprin-beta1,2_repeat1 357..422 CDD:188962 20/65 (31%)
SAM 359..423 CDD:197735 20/64 (31%)
SAM_liprin-beta1,2_repeat2 438..499 CDD:188965 22/62 (35%)
SAM 439..499 CDD:197735 22/61 (36%)
SAM_liprin-beta1,2_repeat3 529..600 CDD:188968 31/70 (44%)
SAM 530..599 CDD:197735 31/68 (46%)
kaznbXP_017213738.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D255905at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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