DRSC/TRiP Functional Genomics Resources

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Protein Alignment Liprin-beta and Liprin-gamma

DIOPT Version :9

Sequence 1:NP_001261806.1 Gene:Liprin-beta / 39524 FlyBaseID:FBgn0036376 Length:680 Species:Drosophila melanogaster
Sequence 2:NP_001097414.1 Gene:Liprin-gamma / 37552 FlyBaseID:FBgn0034720 Length:1152 Species:Drosophila melanogaster


Alignment Length:698 Identity:182/698 - (26%)
Similarity:296/698 - (42%) Gaps:173/698 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 KMLEAALQQMDGLIS--STATQAGSVSISGAGSS----LTLSERNLISATNVLSTAKTLALALQQ 67
            ::||.:   .||.:.  .||.:..:|: ||.||:    :...|..|.|..|.|     |.:.|::
  Fly   323 RLLELS---TDGAVGGVDTAPEMEAVA-SGEGSAAKERIERLESELRSVKNQL-----LTMRLER 378

  Fly    68 VGLAAPAPD------PVTAAI------ISDWLETHIPRQDSDERMRRLQ---------RDKEGLA 111
            ..|.....|      .:.|::      :.|::..:      .||:|..:         ||:|   
  Fly   379 KKLRTDKSDLLGQVKQLCASLQEKEQELRDFIRNY------QERVRETETTNAKISGDRDRE--- 434

  Fly   112 LQYQMLAERVSEQADKIIELEGLITEKSQQLCTKEEQLQRQMISSSALETQKLELMSALSELK-L 175
             ::|:| ::..::|::.:.|       :|||..::.||||   ....|:..:.:|...||:.: |
  Fly   435 -RFQLL-KQARDEAERSLAL-------AQQLSARDLQLQR---LQEQLQEARRQLTGCLSDQESL 487

  Fly   176 HRTALEQANDGGSAISANIPYGSLSNINQKAFMGS------PKTPPSALRHQIKPQFHSLPRSHG 234
            |..|........|        |.||.:...:.||.      ..|..|...:.:.....||....|
  Fly   488 HSFAPLTPPSAAS--------GMLSQMAAASGMGGGLAGMRGTTEDSGRGNSLSAFSGSLSGGSG 544

  Fly   235 KFVNNNNNRALD------VNANSSGKQRNVAFASNEH---ILIDDNHHQAEDAMTSSFMSQF-TP 289
            ....:.|:.:.|      .:..|:|.:.|.:..:.::   |.:|.:   :...::|..|.|| ||
  Fly   545 ATAGDRNSCSNDSGLRNSSDRESTGGELNFSDGTCDNGPCITVDPD---SISLVSSQNMYQFGTP 606

  Fly   290 SPKLRERSARGLRNILGKLRRSNSSNCELTALEQ----AEPE--------------FRRG--GAR 334
                :|||.     .|..|..:..|.    ::||    .:||              .:.|  |||
  Fly   607 ----KERSP-----TLSPLNSAAYSR----SVEQLGSPVDPEGPGNGAISRKFANASKSGPLGAR 658

  Fly   335 ATAGGRIEWSAQTPLFGEN----------------EKHWT-----------------------TW 360
            ...||  .|.:.:.:|..:                :..|.                       .|
  Fly   659 NGRGG--TWGSISRVFARSRNKNKALSADGVTEYADYSWNPLTEEGYAEKLRLLREASQLPIDRW 721

  Fly   361 GAQEVCNWL-AYMGLGCYEDNCRKWLNANPSVSFFTASPVDIERELNLKMPLHRKKILLAIDDLT 424
            .|.:|..|| ..:|:..|...|.:  |..........:.|::|..|.|..|:||||:.|||::..
  Fly   722 RATQVLAWLEVALGMPQYSARCAE--NVKSGKVLLELNDVELEAGLGLAHPMHRKKLRLAIEEQR 784

  Fly   425 GKEFDDLTLKASSLDVTWV-LRWLDDIGLPQYKDYFMQAKIDGRMLHRLTLEDLSQ-LHVSSCLH 487
            ..|.....| .:.|..||| ..||.|||||||.:.|:|:.:|.|||..|:.::|.: |.|:...|
  Fly   785 RPEMVRYPL-ITQLGHTWVATEWLPDIGLPQYAEPFVQSLVDARMLDTLSKKELEKFLGVTRKFH 848

  Fly   488 IASLRAGILCMRRLSWNAEGLIRRSIKVVSEDEAAATPDRDNVELWTAHRIMGWLQTIDLSEYTP 552
            .||:..||..:|.:.::.:.|..|  :|.||     |.|.|.: :||..|.:.|:::|||.||..
  Fly   849 QASIVHGIHVLRIVKYDRQTLAMR--RVQSE-----TVDTDPI-VWTNQRFIRWVRSIDLGEYAD 905

  Fly   553 NLRGAGVHGALMLYEPRFNADLLADLLSIPPSKSLLRRHLAMHFKELV 600
            ||:.:||||.|::.||.|:.|.:|..|.|||||:::||||...|..|:
  Fly   906 NLKDSGVHGGLVVLEPSFSGDTMATALGIPPSKNIIRRHLNTEFDALI 953

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Liprin-betaNP_001261806.1 SAM_liprin-beta1,2_repeat1 357..422 CDD:188962 22/88 (25%)
SAM 359..423 CDD:197735 21/64 (33%)
SAM_liprin-beta1,2_repeat2 438..499 CDD:188965 28/62 (45%)
SAM 439..499 CDD:197735 27/61 (44%)
SAM_liprin-beta1,2_repeat3 529..600 CDD:188968 32/70 (46%)
SAM 530..599 CDD:197735 32/68 (47%)
Liprin-gammaNP_001097414.1 TBPIP <341..437 CDD:284512 22/111 (20%)
SAM_kazrin_repeat1 718..787 CDD:188963 21/70 (30%)
SAM 719..781 CDD:197735 20/63 (32%)
SAM_kazrin_repeat2 796..860 CDD:188966 28/63 (44%)
SAM 805..860 CDD:197735 24/54 (44%)
SAM_kazrin_repeat3 882..953 CDD:188969 33/71 (46%)
SAM 885..>934 CDD:197735 22/48 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D22196at6960
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.920

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