DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Liprin-beta and ppfibp2a

DIOPT Version :9

Sequence 1:NP_001261806.1 Gene:Liprin-beta / 39524 FlyBaseID:FBgn0036376 Length:680 Species:Drosophila melanogaster
Sequence 2:XP_005159254.1 Gene:ppfibp2a / 100317962 ZFINID:ZDB-GENE-070705-277 Length:826 Species:Danio rerio


Alignment Length:804 Identity:230/804 - (28%)
Similarity:343/804 - (42%) Gaps:254/804 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 ERMRRLQRDKEGLALQYQMLAERVSEQADKIIELEGLITEKSQQLCTKEEQLQRQMISSSALETQ 162
            ||:.||:.|||.|.||..:|.::|..|..||.:||..:.|...:|.:.||.||::..|.|:||:|
Zfish    30 ERLSRLEGDKESLVLQVSVLTDQVEAQGAKIRDLENSLGEYQHKLNSTEEMLQQEFFSRSSLESQ 94

  Fly   163 KLELMSALSELKL--------HRTALEQANDGGSAI------------------SAN-------I 194
            ||.||..:|.|||        |....|:.:...|.:                  |.|       |
Zfish    95 KLGLMEEVSCLKLKLGDMEDKHINCAERQHKAESVVNLISELQEQMCRIRQEISSKNPEKPAEMI 159

  Fly   195 P---YGS---------------------------------------------------------- 198
            |   |||                                                          
Zfish   160 PEEGYGSEPAQASQTEPKPTNLLQELKILKHRVEELEQEKTHYEQKLKVTQAEIMTLQQLLNCKN 224

  Fly   199 --LSNINQKAFMGSPKTPPSALRHQI---------------KPQFHSLPRSHGK----------- 235
              :.|:..:....:|.:..||.|.:|               |....||..::.:           
Zfish   225 SEIENLQAQLLSRAPVSVDSAEREEIYRRRLNTKHQELQRLKTGMESLIAANDEKDRQIEELTLL 289

  Fly   236 ------------FVNNNNNRALDVNA-----NSSGKQR--------NVAFASNEHILID------ 269
                        .|....::::.:.:     |.:.|.:        .:.|:|:..:|..      
Zfish   290 LSQFKQMNEIMTLVQGTEDKSIQIRSEDEKQNGAVKMKTLIQKAHPELTFSSSTPLLFSSVSSQK 354

  Fly   270 -----------------------DNHHQAEDAMT------------------------------- 280
                                   ||.||...|:|                               
Zfish   355 DANSRSNSIEDFNGSSTPKTGQADNKHQTLPAVTLPEKREGETSDTSGKKSPENKDEDINIKTMK 419

  Fly   281 ----------SSFMSQFTPSPKLRER-SARGLRNILGKLRRSNSSNCELTALEQAEP-EFRRGGA 333
                      ||.......||..:|. ....:|.:.||::|:...:.:|      || :|:|||.
Zfish   420 DTTNSDLSSVSSGAESGQQSPVSQENVKNTSIRKLWGKMKRTGVLSDDL------EPTQFKRGGF 478

  Fly   334 RATAGGRIEWSAQTPLFGENEKHWT---TWGAQEVCNWLAYMGLGCYEDNCRKWLNANPSVSFFT 395
            |||||.|:   .:||..|.:.:..|   .|..::||.|:...|||.|....|:|:::..::  .:
Zfish   479 RATAGPRL---IRTPDSGRSSRSQTPFCKWTTEQVCGWMEECGLGQYVSLARQWVDSGQTL--LS 538

  Fly   396 ASPVDIERELNLKMPLHRKKILLAIDDLTGKEFDDLTLKASSLDVTWVLRWLDDIGLPQYKDYFM 460
            |:|.::|:|:.:|.||||||:.||:...:.|..:    |:|.||..||.|||||||||||||.|.
Zfish   539 ATPQELEKEICIKHPLHRKKLQLALRAFSNKTME----KSSELDHIWVTRWLDDIGLPQYKDQFY 599

  Fly   461 QAKIDGRMLHRLTLEDLSQLHVSSCLHIASLRAGILCMRRLSWNAEGLIRRSIKVVSEDEAAATP 525
            ::|:|||||..||:.||..|.|:|.||..|::..|..:....:|...|.||     ..||...:|
Zfish   600 ESKVDGRMLQYLTVNDLLFLKVTSQLHHLSIKCAIHVLHVNKFNPNCLRRR-----PGDEFKTSP 659

  Fly   526 DRDNVELWTAHRIMGWLQTIDLSEYTPNLRGAGVHGALMLYEPRFNADLLADLLSIPPSKSLLRR 590
              ..|..|:.||:|.||:::||:||.|||||:||||.|::.||||:::.||.||:|||.|:||||
Zfish   660 --SEVVQWSNHRVMEWLRSVDLAEYAPNLRGSGVHGGLIILEPRFHSETLALLLNIPPQKTLLRR 722

  Fly   591 HLAMHFKELVGRPVILSKRDAESAPGYQPLSITAKLKPVKR--TQF-SLKRRKSSKSQSDVDWTE 652
            |||.:|..|||......||:..:|.|:.||:.|||::|.|.  |.| .|::.|..:|      .:
Zfish   723 HLATNFYTLVGLQAQQEKREFANASGHAPLTTTAKVRPKKLGFTHFRQLRKLKMDES------AD 781

  Fly   653 YVCPMNASVPETYLADTAKEHESS 676
            |:|||:... ...|..|.|:|.:|
Zfish   782 YICPMDTGT-SPVLNGTPKKHYAS 804

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Liprin-betaNP_001261806.1 SAM_liprin-beta1,2_repeat1 357..422 CDD:188962 24/67 (36%)
SAM 359..423 CDD:197735 23/63 (37%)
SAM_liprin-beta1,2_repeat2 438..499 CDD:188965 35/60 (58%)
SAM 439..499 CDD:197735 34/59 (58%)
SAM_liprin-beta1,2_repeat3 529..600 CDD:188968 41/70 (59%)
SAM 530..599 CDD:197735 41/68 (60%)
ppfibp2aXP_005159254.1 iSH2_PI3K_IA_R 135..233 CDD:304922 8/97 (8%)
SAM 502..566 CDD:197735 23/65 (35%)
SAM_liprin-beta1,2_repeat1 502..565 CDD:188962 23/64 (36%)
SAM_liprin-beta1,2_repeat2 576..638 CDD:188965 35/61 (57%)
SAM 582..637 CDD:197735 32/54 (59%)
SAM_liprin-beta1,2_repeat3 661..732 CDD:188968 41/70 (59%)
SAM 662..724 CDD:197735 37/61 (61%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170586511
Domainoid 1 1.000 137 1.000 Domainoid score I4845
eggNOG 1 0.900 - - E1_KOG1899
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 376 1.000 Inparanoid score I2050
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D255905at33208
OrthoFinder 1 1.000 - - FOG0002604
OrthoInspector 1 1.000 - - otm25681
orthoMCL 1 0.900 - - OOG6_104783
Panther 1 1.100 - - O PTHR12587
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1710
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1413.760

Return to query results.
Submit another query.