DRSC/TRiP Functional Genomics Resources

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Protein Alignment Liprin-beta and olfml1

DIOPT Version :9

Sequence 1:NP_001261806.1 Gene:Liprin-beta / 39524 FlyBaseID:FBgn0036376 Length:680 Species:Drosophila melanogaster
Sequence 2:XP_001342693.3 Gene:olfml1 / 100003048 ZFINID:ZDB-GENE-090422-2 Length:390 Species:Danio rerio


Alignment Length:293 Identity:55/293 - (18%)
Similarity:100/293 - (34%) Gaps:102/293 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 LISATNVLSTAKTLALALQQVGLAAPAPDPVTAAIISDWLETHIPR--QDSDERMRRLQRDKEGL 110
            |:|...:|     |.|.::|.....|           |::..:..|  |..:.|:.:.::|.:..
Zfish     2 LLSLVTIL-----LLLGVEQAQRTTP-----------DFIMEYFQRQLQQMEGRLIKCEQDFQHF 50

  Fly   111 ALQYQMLAERVSEQADKIIELEGLITEKSQQLCTKEEQLQRQM--------------ISSSALET 161
            :.:...:::.:.:|..|:..|...:.........:.::::|::              |..|.||.
Zfish    51 SQRMYDMSKEIHDQTGKMNILRSEVKSNVDTFALRLDRVKREVEYLQNKIPDTAQVDIEDSLLER 115

  Fly   162 QKLELMSALSELKLHRTA--------------------LEQANDGGSAI-------SANIPY--- 196
            |       :.|.||.||:                    :::|.|...|.       ||.|.:   
Zfish   116 Q-------VKEEKLKRTSVIPKDKDCSSELVGIKSLKIVKKAGDVNGAWMKDPTKGSAKIYFFSG 173

  Fly   197 ---GSLSNINQ-KAFMGSPKTPPSALRHQIKPQFHSLP---RSHGKFVNN---------NNNRAL 245
               |::...|. |||..:..|.        |.:..|||   ...|..|.|         .||..|
Zfish   174 DRNGTILAFNSLKAFTDTNSTK--------KMEIISLPFPWHGTGHVVYNGFVYYHHADTNNEIL 230

  Fly   246 DVNANS---------SGKQRNVAFASNEHILID 269
            .|:.|:         .|..|...::.:.|.|:|
Zfish   231 KVHLNNRTVVDRVLLHGAGRMPVYSLSPHTLLD 263

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Liprin-betaNP_001261806.1 SAM_liprin-beta1,2_repeat1 357..422 CDD:188962
SAM 359..423 CDD:197735
SAM_liprin-beta1,2_repeat2 438..499 CDD:188965
SAM 439..499 CDD:197735
SAM_liprin-beta1,2_repeat3 529..600 CDD:188968
SAM 530..599 CDD:197735
olfml1XP_001342693.3 OLF 138..385 CDD:280371 29/134 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170586510
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.930

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