DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vps36 and SNF8

DIOPT Version :10

Sequence 1:NP_648660.1 Gene:Vps36 / 39523 FlyBaseID:FBgn0086785 Length:399 Species:Drosophila melanogaster
Sequence 2:NP_015323.1 Gene:SNF8 / 856105 SGDID:S000005923 Length:233 Species:Saccharomyces cerevisiae


Alignment Length:248 Identity:56/248 - (22%)
Similarity:105/248 - (42%) Gaps:44/248 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   168 KRTGIGGIERHLEAKAKATDENIALAFQDLSV---LMAMAKDMVGVSKTISSKIRKQKGEISDDE 229
            |:.|:...:...:.|....::.| |..|.:.:   ||...:.:|..:|..:|::     :.|.:.
Yeast     2 KQFGLAAFDELKDGKYNDVNKTI-LEKQSVELRDQLMVFQERLVEFAKKHNSEL-----QASPEF 60

  Fly   230 TVRFKSYLMSLGIDDPVT---RDN--FTSNSAYFSSLAR--QICEMLLDPIEEQGGMMSLADV-- 285
            ..:|.....|:|| ||::   ||.  ||.|..|:....:  :||....|   ..||::|..::  
Yeast    61 RSKFMHMCSSIGI-DPLSLFDRDKHLFTVNDFYYEVCLKVIEICRQTKD---MNGGVISFQELEK 121

  Fly   286 --YCRVNRARGLELLSPE-DLLHACE-----QLSGPIRLRSFPSGARVLQLESHDDALIAVDTLE 342
              :.::|  .||:.|... |:|.:.|     |:.|...|||.|:     :|.|....::.:.::.
Yeast   122 VHFRKLN--VGLDDLEKSIDMLKSLECFEIFQIRGKKFLRSVPN-----ELTSDQTKILEICSIL 179

  Fly   343 KVEAAESLAVEELAKQLGISLLLAKERL--LVAERLGKVCRDESVEGLRFYPN 393
            ...     ::..|...||...:.:|..|  :||..|..:......|.|.:.|:
Yeast   180 GYS-----SISLLKANLGWEAVRSKSALDEMVANGLLWIDYQGGAEALYWDPS 227

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vps36NP_648660.1 PH-GRAM-like_Eap45 1..134 CDD:275408
EAP30 170..383 CDD:461201 52/234 (22%)
SNF8NP_015323.1 EAP30 4..214 CDD:461201 52/231 (23%)
Blue background indicates that the domain is not in the aligned region.

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